LXL04_028275 | RubberDandelionOmics

Gene overview

LXL04_028275

Reference: OH-1004 Chr: Chr06 Coordinates: 36524062-36525251 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

909 bp · LXL04_028275|LXL04_028275|OH1004|cDNA

ATGGGTTCAAGAGGGCAtggaccaccaccaccaccgtaTGGAGGGCGGTCAACCCAACCTCCTGGGATGATGCGCCATGGTTCATACTCGTTGAGCCACACCATAGATCCACACAATCACCACCACCATGATCATAGAGACAACATGCCAGTGTCTCAGTCTCAGTCTCAGTCATCTGAACTAGAACGGCTAGCCGGAGACAACAAAAGACTGGCAACCACTCATGTGGCTTTACGCCAAGACTTAGCCGCCACTCAACA...

CDS

Download CDS FASTA

909 bp · LXL04_028275|LXL04_028275|OH1004|CDS

ATGGGTTCAAGAGGGCATGGACCACCACCACCACCGTATGGAGGGCGGTCAACCCAACCTCCTGGGATGATGCGCCATGGTTCATACTCGTTGAGCCACACCATAGATCCACACAATCACCACCACCATGATCATAGAGACAACATGCCAGTGTCTCAGTCTCAGTCTCAGTCATCTGAACTAGAACGGCTAGCCGGAGACAACAAAAGACTGGCAACCACTCATGTGGCTTTACGCCAAGACTTAGCCGCCACTCAACA...

Protein

Download Protein FASTA

302 aa · LXL04_028275|LXL04_028275|OH1004|PROTEIN

MGSRGHGPPPPPYGGRSTQPPGMMRHGSYSLSHTIDPHNHHHHDHRDNMPVSQSQSQSSELERLAGDNKRLATTHVALRQDLAATQQEIQKLRAHIGSIQTESDIQVRMLLDKIAKMEVHIRAGENVKTDLQKAHTEARALVANRNELISQIEQTTKEFEKVHADVDKLPEMQGELDGLRLEHHKLRSAFEHEKRKNTEKVAKMEIMERDLVRVEREVERLRAEVLNADKMPHGNVYGGTHMNPELYPPPPHMHASGGYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028275`
TK1151 ID	TkA07G137720
OH-1004 ID	LXL04_028275
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028275

Location Chr06:36524062-36525251 (+)

Description Similar to FLXL2: Protein FLX-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67170`	Has no transcriptional activation activity.	No verified direct reference in this release
`At5g61920`	Involved in FLC activation and flowering time control, but has no transcriptional activation activity.	Two FLX family members are non-redundantly required to establish the vernalization requirement in Arabidopsis.2013 · DOI: 10.1038/ncomms3186
`At3g14750`	Has no transcriptional activation activity.	No verified direct reference in this release
`At1g55170`	Has no transcriptional activation activity.	No verified direct reference in this release
`At2g30120`	Transactivator required for FRIGIDA-mediated activation of FLC and for the expression of the repressors of flowering AGL27/MAF1 and AGL31/MAF2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028275 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009908 flower development Biological Process

GO:0030154 cell differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016604 nuclear body Cellular Component

KEGG gene cross-reference

ath:AT1G55170

ath:AT1G67170

ath:AT2G30120

ath:AT3G14750

ath:AT5G61920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.679

Rank 1 · LXL04_028275 · OH-1004

Nucleus0.362

Rank 2 · LXL04_028275 · OH-1004

Cell membrane0.065

Rank 3 · LXL04_028275 · OH-1004

Lysosome / Vacuole0.032

Rank 4 · LXL04_028275 · OH-1004

Endoplasmic reticulum0.028

Rank 5 · LXL04_028275 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TD8`	Arabidopsis thaliana	Protein FLX-like 2	37.668%	Swiss-Prot	moderate database homology
`Q9FH51`	Arabidopsis thaliana	Protein FLX-like 4	38.119%	Swiss-Prot	moderate database homology
`Q93V84`	Arabidopsis thaliana	Protein FLX-like 1	30.252%	Swiss-Prot	moderate database homology
`Q9C717`	Arabidopsis thaliana	Protein FLX-like 3	30.172%	Swiss-Prot	moderate database homology
`F4IMQ0`	Arabidopsis thaliana	Protein FLC EXPRESSOR	25.731%	Swiss-Prot	weak database homology

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