LXL04_028267 | RubberDandelionOmics

Gene overview

LXL04_028267

Reference: OH-1004 Chr: Chr06 Coordinates: 36394379-36396250 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

947 bp · LXL04_028267|LXL04_028267|OH1004|cDNA

gaggaagtaGTCAAGGTGGAAGCCGAGATGGAGGCATAGACGCCAACGGATTTCGACTTTTGAGATTTTTGCTGTGTTTGTGTGTCTGTGAAAGACGATCGGAAATGGTGGCGATTGAACCTTTGCCTTCCACCGATATCGAATCAAAACCCTCAAAGTCAACAACCACCGGCGATAGATTAAATGCTGATGGAGTAGCTTCGAGTAGTGGAGATAAAGCAACAGCCGACGGATACGCATCCGACGGGTACGAAACGGCA...

CDS

Download CDS FASTA

888 bp · LXL04_028267|LXL04_028267|OH1004|CDS

TTGAGATTTTTGCTGTGTTTGTGTGTCTGTGAAAGACGATCGGAAATGGTGGCGATTGAACCTTTGCCTTCCACCGATATCGAATCAAAACCCTCAAAGTCAACAACCACCGGCGATAGATTAAATGCTGATGGAGTAGCTTCGAGTAGTGGAGATAAAGCAACAGCCGACGGATACGCATCCGACGGGTACGAAACGGCAAGCGAAACTGATGTTGGCGATGATGAGTCGGTTTCTGAGAATCCTGATAAATCGTACGC...

Protein

Download Protein FASTA

295 aa · LXL04_028267|LXL04_028267|OH1004|PROTEIN

MRFLLCLCVCERRSEMVAIEPLPSTDIESKPSKSTTTGDRLNADGVASSSGDKATADGYASDGYETASETDVGDDESVSENPDKSYALEHEQQQKLEEISAKDPTYEDALNDEEFKQKVLAQMNDAKVEGNKLFGDGLYEEALLKYDHAIQLSPEMPSFSEIKSICHNNRATCFFKLGKYEDTVKECSKALELNPKYMKSLVRRGEANEKLENYEEAIADMKKMLELDPSSYQAKKTIIRLEPLAIQKREKMKEEMLGKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028267`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_028267`
Location	Chr06:36394379-36396250 (-)
Description	Similar to TTC1: Tetratricopeptide repeat protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028267` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006457 protein folding Biological Process GO:0070098 chemokine-mediated signaling pathway Biological Process GO:0070286 axonemal dynein complex assembly Biological Process GO:0005737 cytoplasm Cellular Component GO:0005778 peroxisomal membrane Cellular Component GO:0005829 cytosol Cellular Component GO:0120293 dynein axonemal particle Cellular Component GO:0030674 protein-macromolecule adaptor activity Molecular Function GO:0051082 unfolded protein binding Molecular Function
KEGG gene cross-reference	bta:504602 hsa:7265 mmu:66827 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608

Rank 1 · LXL04_028267 · OH-1004

Nucleus0.239

Rank 2 · LXL04_028267 · OH-1004

Peroxisome0.148

Rank 3 · LXL04_028267 · OH-1004

Mitochondrion0.130

Rank 4 · LXL04_028267 · OH-1004

Golgi apparatus0.096

Rank 5 · LXL04_028267 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00515.35TPR_1166-197 aa

PF00515.35TPR_1200-230 aa

PF13181.13TPR_8200-230 aa

PF07719.24TPR_2201-230 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028267	`PF00515.35`	TPR_1	166	197	9.9e-19	67.0
LXL04_028267	`PF00515.35`	TPR_1	200	230	9.9e-19	67.0
LXL04_028267	`PF13181.13`	TPR_8	200	230	5.7e-10	39.3
LXL04_028267	`PF07719.24`	TPR_2	201	230	1.2e-16	60.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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