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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_028213
Reference: OH-1004 Chr: Chr06 Coordinates: 34799447-34802074 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2559 bp · LXL04_028213|LXL04_028213|OH1004|cDNA

ATGGGGTTTGCTCTCTTGGGTTCAATTGTGGTTCTAACTCTGTTCTTTTGGTCAAACCTTGGTCAACAACAAGAACAGCACACACCCATTCCCAATACAGATGAGTtcttcatctttgatttctttCAAAAAATGGGTGCAATGAATTCGTCTTCTTTTTCTCATGTTTACAATTTTTCATCCCCCTTTTGTTCATCGCAAATTGTTTTCTGTGATGCCAATCAAGAACATGTCGTAGGTCTAAATGCTCGTAATTTGGG...

CDS

Download CDS FASTA

2559 bp · LXL04_028213|LXL04_028213|OH1004|CDS

ATGGGGTTTGCTCTCTTGGGTTCAATTGTGGTTCTAACTCTGTTCTTTTGGTCAAACCTTGGTCAACAACAAGAACAGCACACACCCATTCCCAATACAGATGAGTTCTTCATCTTTGATTTCTTTCAAAAAATGGGTGCAATGAATTCGTCTTCTTTTTCTCATGTTTACAATTTTTCATCCCCCTTTTGTTCATCGCAAATTGTTTTCTGTGATGCCAATCAAGAACATGTCGTAGGTCTAAATGCTCGTAATTTGGG...

Protein

Download Protein FASTA

852 aa · LXL04_028213|LXL04_028213|OH1004|PROTEIN

MGFALLGSIVVLTLFFWSNLGQQQEQHTPIPNTDEFFIFDFFQKMGAMNSSSFSHVYNFSSPFCSSQIVFCDANQEHVVGLNARNLGLSGSIPDNTIGKLTKLQSLDLSNNQIVNLPDDFWSLGSLKTLNLSNNKISMNLPSNIGNFGSLEILDLSVNNFFGCFPESISSLISLQVLNLNRNGFESTVPLGIVSCKSLISLDLSSNGFNGSLPDGFGSSFPKLKSLNLAGNAMRGSVVEIFRESLEVVDLSSNHIEGHIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_028213
TK1151 IDTkA07G131120
OH-1004 IDLXL04_028213
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_028213
LocationChr06:34799447-34802074 (-)
DescriptionSimilar to At2g24230: Probable LRR receptor-like serine/threonine-protein kinase At2g24230
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g24230 Probable LRR receptor-like serine/threonine-protein kinase At2g24230. No verified direct reference in this release
At5g58150 Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150. No verified direct reference in this release
At5g07280 Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. No verified direct reference in this release
At4g39400 Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.
Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.1999 · DOI: 10.1104/pp.121.3.743
Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.2000 · DOI: 10.1104/pp.123.4.1247
The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1.2004 · DOI: 10.1105/tpc.104.023903
The Arabidopsis thaliana brassinosteroid receptor (AtBRI1) contains a domain that functions as a guanylyl cyclase in vitro.2007 · DOI: 10.1371/journal.pone.0000449
BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis.2008 · DOI: 10.1126/science.1156973
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.2009 · DOI: 10.1073/pnas.0810249106
BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis.2013 · DOI: 10.1111/tpj.12175

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0342300 May be involved in brassenosteroid (BR) perception in roots.
The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice.2006 · DOI: 10.1104/pp.105.072330
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028213 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009556 microsporogenesis Biological Process
GO:0010234 anther wall tapetum cell fate specification Biological Process
GO:0045088 regulation of innate immune response Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0019199 transmembrane receptor protein kinase activity Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT2G24230
ath:AT5G07280
ath:AT5G58150
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852
Rank 1 · LXL04_028213 · OH-1004
Endoplasmic reticulum0.089
Rank 2 · LXL04_028213 · OH-1004
Cytoplasm0.074
Rank 3 · LXL04_028213 · OH-1004
Nucleus0.061
Rank 4 · LXL04_028213 · OH-1004
Lysosome / Vacuole0.028
Rank 5 · LXL04_028213 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23211.1LRR_LRWD188-163 aa
PF13855.13LRR_891-136 aa
PF23598.2LRR_1495-155 aa
PF12799.14LRR_4125-163 aa
PF13855.13LRR_8149-207 aa
PF13855.13LRR_8221-277 aa
PF23598.2LRR_14282-355 aa
PF12799.14LRR_4290-329 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_028213PF23211.1LRR_LRWD1881637.1e-0626.6
LXL04_028213PF13855.13LRR_8911361.3e-2899.2
LXL04_028213PF23598.2LRR_14951557.1e-1865.2
LXL04_028213PF12799.14LRR_41251638.2e-31106.1
LXL04_028213PF13855.13LRR_81492071.3e-2899.2
LXL04_028213PF13855.13LRR_82212771.3e-2899.2
LXL04_028213PF23598.2LRR_142823557.1e-1865.2
LXL04_028213PF12799.14LRR_42903298.2e-31106.1
LXL04_028213PF12799.14LRR_43383718.2e-31106.1
LXL04_028213PF00069.32Pkinase5326151.2e-31110.8
LXL04_028213PF07714.24PK_Tyr_Ser-Thr5337734.4e-32112.1
LXL04_028213PF00069.32Pkinase6668391.2e-31110.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGK9Arabidopsis thalianaProbable LRR receptor-like serine/threonine-protein kinase At2g2423062.002%Swiss-Protstrong database homology
Q9LVN2Arabidopsis thalianaProbably inactive leucine-rich repeat receptor-like protein kinase At5g5815047.619%Swiss-Protmoderate database homology
Q9LYN8Arabidopsis thalianaLeucine-rich repeat receptor protein kinase EMS132.062%Swiss-Protmoderate database homology
O22476Arabidopsis thalianaProtein BRASSINOSTEROID INSENSITIVE 132.059%Swiss-Protmoderate database homology
Q6ZCZ2Oryza sativa subsp. japonicaBrassinosteroid LRR receptor kinase BRL332.907%Swiss-Protmoderate database homology

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