LXL04_028097 | RubberDandelionOmics

Gene overview

LXL04_028097

Reference: OH-1004 Chr: Chr06 Coordinates: 31245722-31246527 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

597 bp · LXL04_028097|LXL04_028097|OH1004|cDNA

ATGGAAGTTGAAGTAAAGCTCCGCCTACCTGATTCCGAAACCTACAAAACCATAATTTCCCTCCTCTCCCCTTTCCACATCAGAACCCACAACCAACACAACAATTTCTTCGACGGCGTTGCCGGCCAACTCTCATCCAAACGCGCAGTCCTCCGCCTCCGTTTTTACAACGACCAACCTACCACTAAATGCATCATCTGTCTCAAAGCAAAAGCCGTACTCGTAGACGGGGTGAGCAGGgtcgaagaagatgaagaaga...

CDS

Download CDS FASTA

597 bp · LXL04_028097|LXL04_028097|OH1004|CDS

ATGGAAGTTGAAGTAAAGCTCCGCCTACCTGATTCCGAAACCTACAAAACCATAATTTCCCTCCTCTCCCCTTTCCACATCAGAACCCACAACCAACACAACAATTTCTTCGACGGCGTTGCCGGCCAACTCTCATCCAAACGCGCAGTCCTCCGCCTCCGTTTTTACAACGACCAACCTACCACTAAATGCATCATCTGTCTCAAAGCAAAAGCCGTACTCGTAGACGGGGTGAGCAGGGTCGAAGAAGATGAAGAAGA...

Protein

Download Protein FASTA

198 aa · LXL04_028097|LXL04_028097|OH1004|PROTEIN

MEVEVKLRLPDSETYKTIISLLSPFHIRTHNQHNNFFDGVAGQLSSKRAVLRLRFYNDQPTTKCIICLKAKAVLVDGVSRVEEDEEELDPSIGQECLIEPNRLGSLVESSRIMKRVKDEFFGEINDVQGLGFVCLGGFKNLRNVYEWKGLMIEVDETSFDFGTLYEIECESTEPEKAKEVIEDCHSYGNWDLGKKKLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028097`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028097

Location Chr06:31245722-31246527 (+)

Description Similar to TTM3: Triphosphate tunnel metalloenzyme 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g11890`	Involved in the hydrolysis of the beta-gamma-phosphoanhydride linkage of triphosphate-containing substrates (inorganic or nucleoside- linked).	Crystal structure and biochemical analyses reveal that the Arabidopsis triphosphate tunnel metalloenzyme AtTTM3 is a tripolyphosphatase involved in root development.2013 · DOI: 10.1111/tpj.12325

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028097 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005680 anaphase-promoting complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0050355 inorganic triphosphate phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT2G11890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.719

Rank 1 · LXL04_028097 · OH-1004

Cytoplasm0.310

Rank 2 · LXL04_028097 · OH-1004

Mitochondrion0.064

Rank 3 · LXL04_028097 · OH-1004

Peroxisome0.036

Rank 4 · LXL04_028097 · OH-1004

Plastid0.029

Rank 5 · LXL04_028097 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01928.27CYTH2-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028097	`PF01928.27`	CYTH	2	183	3.6e-18	66.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SIY3`	Arabidopsis thaliana	Triphosphate tunnel metalloenzyme 3	51.579%	Swiss-Prot	strong database homology

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