Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1101 bp · LXL04_028062|LXL04_028062|OH1004|cDNA
ATGTCCATGGCAGACGTTGGTGCTGGAGGTGAAGAAGTTGTTACATTTGAACGCATTGAAATTCTTACCCGAAGGTTAACTCTTCACATCTCAAATTTCTTAAACTATCATTTTCTAACCAAAATCAAACTTTCAAGGGTCACTACAATGTTGAACTTCGGTTCTGCTTCTTACAGCTTCAAGGACAAATTCGAACCATCATATAAGGGACTAATTCATGAAATGTTCACAATGGTTTTAAGAGGCTTATCTGCCACTAA...
1101 bp · LXL04_028062|LXL04_028062|OH1004|CDS
ATGTCCATGGCAGACGTTGGTGCTGGAGGTGAAGAAGTTGTTACATTTGAACGCATTGAAATTCTTACCCGAAGGTTAACTCTTCACATCTCAAATTTCTTAAACTATCATTTTCTAACCAAAATCAAACTTTCAAGGGTCACTACAATGTTGAACTTCGGTTCTGCTTCTTACAGCTTCAAGGACAAATTCGAACCATCATATAAGGGACTAATTCATGAAATGTTCACAATGGTTTTAAGAGGCTTATCTGCCACTAA...
Protein
Download Protein FASTA366 aa · LXL04_028062|LXL04_028062|OH1004|PROTEIN
MSMADVGAGGEEVVTFERIEILTRRLTLHISNFLNYHFLTKIKLSRVTTMLNFGSASYSFKDKFEPSYKGLIHEMFTMVLRGLSATKLTRLEKFRSCQDGYIVKSSLKVEDGVLYPLERNFFFLPKPQWYRVWKMKFGQQGQFGNFWDLWRCVVNWSNCWNGLVIKLMHGQWNDWDQLCKIVWKDWRLQGQNWNSADMGYWKLIDQRDATFKKVEKEFYMPIQIGITFPEDAMLSPEAKDLIYRLLCDMENRLGTSGPDQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028062 |
|---|---|
| TK1151 ID | TkA07G116930 |
| OH-1004 ID | LXL04_028062 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 69.700 |
| Protein coverage (%) | TK1151 99.608 / OH-1004 97.541Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028062 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:30126507-30128872 (+) | |||||||||
| Description | Similar to SSRP1: FACT complex subunit SSRP1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0048731 system development Biological Process GO:0035101 FACT complex Cellular Component GO:0003677 DNA binding Molecular Function GO:0031491 nucleosome binding Molecular Function GO:0042393 histone binding Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os01g0184900 dosa:Os05g0182600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.