LXL04_028051 | RubberDandelionOmics

Gene overview

LXL04_028051

Reference: OH-1004 Chr: Chr06 Coordinates: 29714942-29716799 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

843 bp · LXL04_028051|LXL04_028051|OH1004|cDNA

ATGGCTTCAATCTATTCAATTTCTCAATCGCAGCTGTTTTCGAAGAAACCCCAGTTCATTTCCACCCAAAAAGCTTCTATATTCCCAATCTCGACCAGCTTCAGTCCGTTGAATCGTTTTGCGTTTACGTCCATGAAAATGGTCGTGGCGGCGACGGGGACGACGGCGGCGGCGGAGGCGGAGGAGAAGTCGAAGAAGAGGTATCCGGGTGAGGGAAAAGGGTTTGTGGAGGAGATGAGGTTTGTGGCTATGAAATTGCA...

CDS

Download CDS FASTA

843 bp · LXL04_028051|LXL04_028051|OH1004|CDS

ATGGCTTCAATCTATTCAATTTCTCAATCGCAGCTGTTTTCGAAGAAACCCCAGTTCATTTCCACCCAAAAAGCTTCTATATTCCCAATCTCGACCAGCTTCAGTCCGTTGAATCGTTTTGCGTTTACGTCCATGAAAATGGTCGTGGCGGCGACGGGGACGACGGCGGCGGCGGAGGCGGAGGAGAAGTCGAAGAAGAGGTATCCGGGTGAGGGAAAAGGGTTTGTGGAGGAGATGAGGTTTGTGGCTATGAAATTGCA...

Protein

Download Protein FASTA

280 aa · LXL04_028051|LXL04_028051|OH1004|PROTEIN

MASIYSISQSQLFSKKPQFISTQKASIFPISTSFSPLNRFAFTSMKMVVAATGTTAAAEAEEKSKKRYPGEGKGFVEEMRFVAMKLHTKDQSKEGEKEAQEKPLPKWEPTINGYLKFLVDSKLVYDTLEKIVEKADFPEYAEFRNTGLERAGSLEKDLAWFKEQGHSIPEPSSPGLDYSAYVEELSKKDPQAFICHFYNTYFAHSAGGRMIGKKVAKEVLNGKELEFYKWDGDLSELLQNVRDKLNIVAESWTREEKNHC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028051`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028051

Location Chr06:29714942-29716799 (-)

Description Similar to HO1: Heme oxygenase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26670`	Key enzyme in the synthesis of the chromophore of the phytochrome family of plant photoreceptors.	Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction.2001 · DOI: 10.1073/pnas.98.4.2053 Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development.1993 · DOI: 10.1016/0092-8674(93)90459-4
`At1g69720`	Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO).	No verified direct reference in this release
`At1g58300`	Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0603000`	Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028051 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006788 heme oxidation Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009648 photoperiodism Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0009877 nodulation Biological Process

GO:0010019 chloroplast-nucleus signaling pathway Biological Process

GO:0010024 phytochromobilin biosynthetic process Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010167 response to nitrate Biological Process

GO:0010229 inflorescence development Biological Process

KEGG gene cross-reference

ath:AT1G58300

ath:AT1G69720

ath:AT2G26670

dosa:Os06g0603000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983

Rank 1 · LXL04_028051 · OH-1004

Cytoplasm0.033

Rank 2 · LXL04_028051 · OH-1004

Mitochondrion0.032

Rank 3 · LXL04_028051 · OH-1004

Peroxisome0.022

Rank 4 · LXL04_028051 · OH-1004

Nucleus0.019

Rank 5 · LXL04_028051 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01126.26Heme_oxygenase84-275 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028051	`PF01126.26`	Heme_oxygenase	84	275	7.1e-13	49.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48782`	Arabidopsis thaliana	Heme oxygenase 1, chloroplastic	65.972%	Swiss-Prot	strong database homology
`Q9C9L4`	Arabidopsis thaliana	Heme oxygenase 3, chloroplastic	70.539%	Swiss-Prot	strong database homology
`Q9LQC0`	Arabidopsis thaliana	Heme oxygenase 4, chloroplastic	62.555%	Swiss-Prot	strong database homology
`Q69XJ4`	Oryza sativa subsp. japonica	Heme oxygenase 1, chloroplastic	71.905%	Swiss-Prot	strong database homology

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