LXL04_028030 | RubberDandelionOmics

Gene overview

LXL04_028030

Reference: OH-1004 Chr: Chr06 Coordinates: 29383059-29386183 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

663 bp · LXL04_028030|LXL04_028030|OH1004|cDNA

ATGGGACGACATAGTACCTCATCAAACTCAACAAGTCCAGAGAGAAATTACAGCAACATGGACACACAAGTTTTCTTGAATGTATATGATCTTACCCCTATCAATTCGTACAGCATCTGGATGGGATTCGGTATTTTTCATTCGGGTATTCAAGTGTACGGTATGGAATACGGATTTGGAGCACATGATTTTCCGATTAGTGGGGTGTTTGAAGTTGAACCAAAGAGTTGCCCGGGTTTCATTTACAGATGTTCAATCCC...

CDS

Download CDS FASTA

663 bp · LXL04_028030|LXL04_028030|OH1004|CDS

ATGGGACGACATAGTACCTCATCAAACTCAACAAGTCCAGAGAGAAATTACAGCAACATGGACACACAAGTTTTCTTGAATGTATATGATCTTACCCCTATCAATTCGTACAGCATCTGGATGGGATTCGGTATTTTTCATTCGGGTATTCAAGTGTACGGTATGGAATACGGATTTGGAGCACATGATTTTCCGATTAGTGGGGTGTTTGAAGTTGAACCAAAGAGTTGCCCGGGTTTCATTTACAGATGTTCAATCCC...

Protein

Download Protein FASTA

220 aa · LXL04_028030|LXL04_028030|OH1004|PROTEIN

MGRHSTSSNSTSPERNYSNMDTQVFLNVYDLTPINSYSIWMGFGIFHSGIQVYGMEYGFGAHDFPISGVFEVEPKSCPGFIYRCSIPLGHITISPSEFRDFIETVASEYHGDTYHLISKNCNHFTDDISERLTGKGIPGWVNRLARLGAVCSCLLPESLQVTTVKQLPEYHNCEEDGNTSVSTTNLPIEYEDVLEQQDKHLLSLSPQPSPEVSFIKEVAR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028030`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028030

Location Chr06:29383059-29386183 (-)

Description Similar to At4g17486: DeSI-like protein At4g17486

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17486`	DeSI-like protein At4g17486.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028030 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0016579 protein deubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004843 cysteine-type deubiquitinase activity Molecular Function

GO:0008474 palmitoyl-(protein) hydrolase activity Molecular Function

GO:0052816 long-chain fatty acyl-CoA hydrolase activity Molecular Function

GO:0061578 K63-linked deubiquitinase activity Molecular Function

GO:0101005 deubiquitinase activity Molecular Function

GO:1990380 K48-linked deubiquitinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G17486

cel:CELE_F36D4.5

gga:421494

mmu:78825

xla:496020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · LXL04_028030 · OH-1004

Nucleus0.210

Rank 2 · LXL04_028030 · OH-1004

Golgi apparatus0.196

Rank 3 · LXL04_028030 · OH-1004

Lysosome / Vacuole0.178

Rank 4 · LXL04_028030 · OH-1004

Endoplasmic reticulum0.159

Rank 5 · LXL04_028030 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05903.21Peptidase_C9723-157 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028030	`PF05903.21`	Peptidase_C97	23	157	1.3e-48	165.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93VG8`	Arabidopsis thaliana	DeSI-like protein At4g17486	50.526%	Swiss-Prot	strong database homology

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