LXL04_027984 | RubberDandelionOmics

Gene overview

LXL04_027984

Reference: OH-1004 Chr: Chr06 Coordinates: 28176505-28179035 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1476 bp · LXL04_027984|LXL04_027984|OH1004|cDNA

ATGCAGAGGGTTAAAGATCAGCAGCTTTCGAGATCTACAAAACCAGCCACCATTCATGCATCTGCTCAGTCCGGCGATCTTCCCGCCGTTCAGAGGCGTCTCCGTGACAACCCTTCACTCATCAATGATCGGAATCCCGTTATGGCAAACACACCCCTTCATGTTGCTGCTGGTCATAACAGTGTTGAAGTTGTTAAGTTTCTCCTCAACATATCAGAACCTGAAAAAGTTGAGTTGGAAGCTATGAACATGTATGGAGA...

CDS

Download CDS FASTA

1476 bp · LXL04_027984|LXL04_027984|OH1004|CDS

ATGCAGAGGGTTAAAGATCAGCAGCTTTCGAGATCTACAAAACCAGCCACCATTCATGCATCTGCTCAGTCCGGCGATCTTCCCGCCGTTCAGAGGCGTCTCCGTGACAACCCTTCACTCATCAATGATCGGAATCCCGTTATGGCAAACACACCCCTTCATGTTGCTGCTGGTCATAACAGTGTTGAAGTTGTTAAGTTTCTCCTCAACATATCAGAACCTGAAAAAGTTGAGTTGGAAGCTATGAACATGTATGGAGA...

Protein

Download Protein FASTA

491 aa · LXL04_027984|LXL04_027984|OH1004|PROTEIN

MQRVKDQQLSRSTKPATIHASAQSGDLPAVQRRLRDNPSLINDRNPVMANTPLHVAAGHNSVEVVKFLLNISEPEKVELEAMNMYGETPLHMAAKNGCNEAAGLLLSHGASTEAKANNGMTPLHLSVWHSLRAEDSSTVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNEKLQSLLKSYLEEQRKQRAVEACSHTKAKMDELETELSKLVGLHELKLQLRKWAKGMLLDERRRALGLKVGSRRPPHMAFLGNPGTGKTMV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027984`
TK1151 ID	TkA07G110870
OH-1004 ID	LXL04_027984
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_027984`
Location	Chr06:28176505-28179035 (-)
Description	Similar to cfxQ: Protein CfxQ homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027984` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0030435 sporulation resulting in formation of a cellular spore Biological Process GO:0009507 chloroplast Cellular Component GO:0005524 ATP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference	bsu:BSU17420 cme:CymeCp015 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.624

Rank 1 · LXL04_027984 · OH-1004

Nucleus0.369

Rank 2 · LXL04_027984 · OH-1004

Mitochondrion0.127

Rank 3 · LXL04_027984 · OH-1004

Cell membrane0.076

Rank 4 · LXL04_027984 · OH-1004

Peroxisome0.057

Rank 5 · LXL04_027984 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796.14Ank_219-115 aa

PF13637.13Ank_419-69 aa

PF13857.13Ank_545-72 aa

PF00023.37Ank50-69 aa

PF13606.13Ank_350-70 aa

PF12796.14Ank_283-153 aa

PF00023.37Ank85-115 aa

PF13857.13Ank_585-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027984	`PF12796.14`	Ank_2	19	115	3.8e-29	101.8
LXL04_027984	`PF13637.13`	Ank_4	19	69	7.5e-18	64.9
LXL04_027984	`PF13857.13`	Ank_5	45	72	4.9e-15	56.2
LXL04_027984	`PF00023.37`	Ank	50	69	2.7e-20	72.0
LXL04_027984	`PF13606.13`	Ank_3	50	70	7.5e-14	51.0
LXL04_027984	`PF12796.14`	Ank_2	83	153	3.8e-29	101.8
LXL04_027984	`PF00023.37`	Ank	85	115	2.7e-20	72.0
LXL04_027984	`PF13857.13`	Ank_5	85	125	4.9e-15	56.2
LXL04_027984	`PF13606.13`	Ank_3	85	111	7.5e-14	51.0
LXL04_027984	`PF13637.13`	Ank_4	90	130	7.5e-18	64.9
LXL04_027984	`PF12796.14`	Ank_2	117	177	3.8e-29	101.8
LXL04_027984	`PF00023.37`	Ank	118	154	2.7e-20	72.0
LXL04_027984	`PF00004.36`	AAA	248	364	1.6e-13	51.9
LXL04_027984	`PF29043.1`	DUF8495	380	489	5e-40	136.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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