Gene Card
Gene overview
cDNA / CDS / Protein Sequences
801 bp · LXL04_027752|LXL04_027752|OH1004|cDNA
ATGGCTGCTTCCAGCATGGCTCTCTCATCTCCTTTCGTCGGACAAGCGGTGAAAACAGCCCCCTCCAGTTCTGAAATTTTGGGAAGTGGACGGGTTTCAATGAGGAAGACAGCAGGTGCCAAGAAGGTTGCGCCATCGGGAAGTCCATGGTACGGCCCTGAGCGTGTGAAATACCTAGGCCCATTCTCCGGTGAAGCCCCATCATACCTGACCGGTGAATTCCCAGGTGACTACGGGTGGGACACTGCTGGACTTTCTGC...
801 bp · LXL04_027752|LXL04_027752|OH1004|CDS
ATGGCTGCTTCCAGCATGGCTCTCTCATCTCCTTTCGTCGGACAAGCGGTGAAAACAGCCCCCTCCAGTTCTGAAATTTTGGGAAGTGGACGGGTTTCAATGAGGAAGACAGCAGGTGCCAAGAAGGTTGCGCCATCGGGAAGTCCATGGTACGGCCCTGAGCGTGTGAAATACCTAGGCCCATTCTCCGGTGAAGCCCCATCATACCTGACCGGTGAATTCCCAGGTGACTACGGGTGGGACACTGCTGGACTTTCTGC...
Protein
Download Protein FASTA266 aa · LXL04_027752|LXL04_027752|OH1004|PROTEIN
MAASSMALSSPFVGQAVKTAPSSSEILGSGRVSMRKTAGAKKVAPSGSPWYGPERVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWSYAT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027752 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027752 |
|---|---|
| Location | Chr06:23134226-23135026 (+) |
| Description | Similar to CAB16: Chlorophyll a-b binding protein 16, chloroplastic |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009416 response to light stimulus Biological Process GO:0009765 photosynthesis, light harvesting Biological Process GO:0009768 photosynthesis, light harvesting in photosystem I Biological Process GO:0009522 photosystem I Cellular Component GO:0009523 photosystem II Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0016168 chlorophyll binding Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | nta:107764358 nta:107773232 sly:108491835 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00504.29Chloroa_b-bind66-232 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027752 | PF00504.29 | Chloroa_b-bind | 66 | 232 | 3.7e-51 | 174.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.