LXL04_027745 | RubberDandelionOmics

Gene overview

LXL04_027745

Reference: OH-1004 Chr: Chr06 Coordinates: 22921181-22924829 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1314 bp · LXL04_027745|LXL04_027745|OH1004|cDNA

ATGCAGATTCCATATCCTCAAGAGTGTGCCGTTGATGCAATGACTTTTACATTGCAAAACAGATGTAACAAGACTATATGGCCAGGAATCCAAGCATCCGGAGGGCAACCACTACTAATGGAAGGCGGCCTTGAGCTAAAGCCTCTACAATCAAGGAACATAACAGCCCCAAAAGGGTGGTCCGGCCGCTTTTGGGGCCGGACCGGATGCATGTTCAATGCATATGGTTTGGGCACCTGCAGCACTGGAGACTGCGGAAG...

CDS

Download CDS FASTA

1314 bp · LXL04_027745|LXL04_027745|OH1004|CDS

ATGCAGATTCCATATCCTCAAGAGTGTGCCGTTGATGCAATGACTTTTACATTGCAAAACAGATGTAACAAGACTATATGGCCAGGAATCCAAGCATCCGGAGGGCAACCACTACTAATGGAAGGCGGCCTTGAGCTAAAGCCTCTACAATCAAGGAACATAACAGCCCCAAAAGGGTGGTCCGGCCGCTTTTGGGGCCGGACCGGATGCATGTTCAATGCATATGGTTTGGGCACCTGCAGCACTGGAGACTGCGGAAG...

Protein

Download Protein FASTA

437 aa · LXL04_027745|LXL04_027745|OH1004|PROTEIN

MQIPYPQECAVDAMTFTLQNRCNKTIWPGIQASGGQPLLMEGGLELKPLQSRNITAPKGWSGRFWGRTGCMFNAYGLGTCSTGDCGSGIYCSGAGGEPPASLAEFTLDSPVDFYDVSLLDGYNLPLSIIPQDDSGICPTVGCETDLNQHCPSNLLVRGDHGQIVACKSACTAFQSPEYCCSGQFQTPNRCKPNKYSQYFKRSCPTSFTYAYDDSSSTFTCRETDYMIRCNNTIWPGIQPSAGRPVLMEGGLELKPQESIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027745`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027745

Location Chr06:22921181-22924829 (-)

Description Similar to At1g18250: Thaumatin-like protein

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18250`	Thaumatin-like protein.	No verified direct reference in this release
`At4g24180`	Involved in local responses of roots to colonization by non-pathogenic plant growth-promoting rhizobacteria (PGPR) fluorescent Pseudomonas spp., but does not seem to be required for the establishment of subsequent induced systemic resistance (ISR).	No verified direct reference in this release
`At1g75040`	Partially responsible for acquired pathogen resistance.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027745 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009682 induced systemic resistance Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G18250

ath:AT4G24180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.559

Rank 1 · LXL04_027745 · OH-1004

Lysosome / Vacuole0.209

Rank 2 · LXL04_027745 · OH-1004

Cytoplasm0.206

Rank 3 · LXL04_027745 · OH-1004

Endoplasmic reticulum0.096

Rank 4 · LXL04_027745 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_027745 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00314.23Thaumatin20-227 aa

PF00314.23Thaumatin228-437 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027745	`PF00314.23`	Thaumatin	20	227	1.1e-160	532.3
LXL04_027745	`PF00314.23`	Thaumatin	228	437	1.1e-160	532.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P50699`	Arabidopsis thaliana	Thaumatin-like protein	56.398%	Swiss-Prot	weak database homology
`A0A1P8B554`	Arabidopsis thaliana	Thaumatin-like protein 1	53.540%	Swiss-Prot	weak database homology
`P28493`	Arabidopsis thaliana	Pathogenesis-related protein 5	54.545%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card