Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1923 bp · LXL04_027632|LXL04_027632|OH1004|cDNA
ATGAAGGGCTCTAATCTTCTACGTGCTCCAGTCTCTCTCTCAACTTCACTTCCGCTATATTCTCCACTCAAATTCGTAGCCTCCTTCAGAAATCCCATATGTTTCAATCACCTAATCCTAAGTTCTTTGAAGCTTCACCCAATTCGCATCTCTTGTGTGCACGCTACTGAACCAATATTTTCAGCTACTCAAGAGACTGTGGAAGTTAGTAAAAATGATTCTCAATTTGTTGAGATTGGGTACATATCTAGTGTCCATGG...
1923 bp · LXL04_027632|LXL04_027632|OH1004|CDS
ATGAAGGGCTCTAATCTTCTACGTGCTCCAGTCTCTCTCTCAACTTCACTTCCGCTATATTCTCCACTCAAATTCGTAGCCTCCTTCAGAAATCCCATATGTTTCAATCACCTAATCCTAAGTTCTTTGAAGCTTCACCCAATTCGCATCTCTTGTGTGCACGCTACTGAACCAATATTTTCAGCTACTCAAGAGACTGTGGAAGTTAGTAAAAATGATTCTCAATTTGTTGAGATTGGGTACATATCTAGTGTCCATGG...
Protein
Download Protein FASTA640 aa · LXL04_027632|LXL04_027632|OH1004|PROTEIN
MKGSNLLRAPVSLSTSLPLYSPLKFVASFRNPICFNHLILSSLKLHPIRISCVHATEPIFSATQETVEVSKNDSQFVEIGYISSVHGLQGEVRVKPNTDFPELRFSEPGRRWLKRQILGKEIVEEVELIEGRGHHGQKSWIIKFNNIEKVEQAQQLVGSTILVLDEDRPELEEGDFYARDLVGMKVTLKESGEPVGTVVNVFDNGGSDLLQVKLSSSLDIIDKNGNMKSEAPLVWVPFVEAIVPHVDMNKREMIITPPKG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027632 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027632 |
|---|---|
| Location | Chr06:20691776-20695612 (-) |
| Description | Similar to rimM: Ribosome maturation factor RimM (Synechococcus sp. (strain RCC307) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006364 rRNA processing Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005737 cytoplasm Cellular Component GO:0005840 ribosome Cellular Component GO:0043022 ribosome binding Molecular Function |
| KEGG gene cross-reference | npu:Npun_F1948 pmf:P9303_26021 pmt:PMT_1951 syr:SynRCC307_0135 syx:SynWH7803_0201 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01782.26RimM77-167 aaPF05239.22PRC174-262 aaPF24986.2PRC_RimM180-261 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027632 | PF01782.26 | RimM | 77 | 167 | 7.4e-22 | 78.1 |
| LXL04_027632 | PF05239.22 | PRC | 174 | 262 | 4.3e-10 | 40.2 |
| LXL04_027632 | PF24986.2 | PRC_RimM | 180 | 261 | 7.7e-11 | 42.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.