Gene Card
Gene overview
cDNA / CDS / Protein Sequences
898 bp · LXL04_027630|LXL04_027630|OH1004|cDNA
ATGGCCGGTGCCGATCCCGAAAAGCTGATCGCCAAAGCCGATAAACTGTCAGTTTACATTCTTCGCCATCGTTCTTAATCTGCTTGTTACCGATTTACAGTACCTAATTTCGCGATCGTGTTGCTGGTTGAACAGAACAAAACTTACTTTAACACGATGGAGTGCCGATTGGAGGAACGCAACTCAATATTACGAACAGGCAGGTTTTACACCATGGGATGCTGGAAAGCATATGGAATCTGCTGGTGCTTTAGCTGTTG...
819 bp · LXL04_027630|LXL04_027630|OH1004|CDS
CTGCTTGTTACCGATTTACAGTACCTAATTTCGCGATCGTGTTGCTGGTTGAACAGAACAAAACTTACTTTAACACGATGGAGTGCCGATTGGAGGAACGCAACTCAATATTACGAACAGGCAGGTTTTACACCATGGGATGCTGGAAAGCATATGGAATCTGCTGGTGCTTTAGCTGTTGAATTAAGCATATGGAATGAAGTTGCTGATTTTTACAGAAGGGCTTCTGAGTTATATAATGAATGTGGGAGGTCACAGCC...
Protein
Download Protein FASTA272 aa · LXL04_027630|LXL04_027630|OH1004|PROTEIN
MLVTDLQYLISRSCCWLNRTKLTLTRWSADWRNATQYYEQAGFTPWDAGKHMESAGALAVELSIWNEVADFYRRASELYNECGRSQPASDALAKGARALEDAKPEVAIAMYTDACSLLEEDGKENMVFDIYRAITSVYIKLEKYTDAATFLLRWAVAANKCNALHSQCKAYLSAIIVYLYAHDFKEAEKCYNDCCQIDTFFSSDQSHCASKLLSAYREADIEEIQRVSKSSTVSNLDHMIIRLARKLPTGEVVAMEVNSV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027630 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027630 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr06:20675276-20677833 (+) | ||||||
| Description | Similar to GSNAP: Gamma-soluble NSF attachment protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0005829 cytosol Cellular Component GO:0030659 cytoplasmic vesicle membrane Cellular Component GO:0031201 SNARE complex Cellular Component GO:0045335 phagocytic vesicle Cellular Component GO:0005483 soluble NSF attachment protein activity Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT4G20410 ddi:DDB_G0269186 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14938.13SNAP46-239 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027630 | PF14938.13 | SNAP | 46 | 239 | 2.2e-11 | 44.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9SPE5 | Arabidopsis thaliana | Gamma-soluble NSF attachment protein | 66.308% | Swiss-Prot | strong database homology |