LXL04_027463 | RubberDandelionOmics

Gene overview

LXL04_027463

Reference: OH-1004 Chr: Chr06 Coordinates: 16613090-16613839 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

750 bp · LXL04_027463|LXL04_027463|OH1004|cDNA

ATGCTCCCAAGGAAGGCGGATGGTCGCAGGGAGGAAAACGAAGGGAGGAAGACAGTCCAAAGCAGGAAGCAAAGCTATGCCCAACGGAAGGAGATCACCTCCTTCTTCATCTCCAACATCCCAGAAGGCACGAACGGATACGACCTCAAAGAAACTTTCAGAGGGTTTGGAAGAATCTCGGATGTTTACATCCCGGGAAGAAAAGACAAAGGTGGCTCATACTTTGGTTTTGTCAAGTTCGAAGGCGTTAAAAACGCACA...

CDS

Download CDS FASTA

750 bp · LXL04_027463|LXL04_027463|OH1004|CDS

ATGCTCCCAAGGAAGGCGGATGGTCGCAGGGAGGAAAACGAAGGGAGGAAGACAGTCCAAAGCAGGAAGCAAAGCTATGCCCAACGGAAGGAGATCACCTCCTTCTTCATCTCCAACATCCCAGAAGGCACGAACGGATACGACCTCAAAGAAACTTTCAGAGGGTTTGGAAGAATCTCGGATGTTTACATCCCGGGAAGAAAAGACAAAGGTGGCTCATACTTTGGTTTTGTCAAGTTCGAAGGCGTTAAAAACGCACA...

Protein

Download Protein FASTA

249 aa · LXL04_027463|LXL04_027463|OH1004|PROTEIN

MLPRKADGRREENEGRKTVQSRKQSYAQRKEITSFFISNIPEGTNGYDLKETFRGFGRISDVYIPGRKDKGGSYFGFVKFEGVKNAHDMEKELQGIRCGHCILKVNISRHGKQDQIRTSRVVEREKVTHTVILQRRQYHQKPRRLNQVGRTYAEAAGARRRDPPPPPSSNIGIHKVQLKPAPAMDMWNDCAVIGEAINLQILIELPKLIKADCCYHRDIYYGGGMRVVLRFNFPTEAKYFIKGEHNWNR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027463`
TK1151 ID	TkA03G465550
OH-1004 ID	LXL04_027463
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.500
Protein coverage (%)	TK1151 49.231 / OH-1004 25.703 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_027463`
Location	Chr06:16613090-16613839 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_027463` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0005654 nucleoplasm Cellular Component GO:0016607 nuclear speck Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference	hsa:10929 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · LXL04_027463 · OH-1004

Nucleus0.331

Rank 2 · LXL04_027463 · OH-1004

Cell membrane0.113

Rank 3 · LXL04_027463 · OH-1004

Mitochondrion0.092

Rank 4 · LXL04_027463 · OH-1004

Endoplasmic reticulum0.039

Rank 5 · LXL04_027463 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_136-100 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027463	`PF00076.29`	RRM_1	36	100	1.2e-08	35.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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