LXL04_027444 | RubberDandelionOmics

Gene overview

LXL04_027444

Reference: OH-1004 Chr: Chr06 Coordinates: 16161622-16163032 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · LXL04_027444|LXL04_027444|OH1004|cDNA

ATGATGACTTCCAGCGATAAAGCTCCCGATGCGATGCCGACGGGCGACGGATCTGTCCCGCCGGGAAAACCCATGACGGTGGGAGATCAAGTTCTCGACAAAAGTGCTCAGATTCTGCAATCTTTGAAGCCCATTAAACAAATGAGCATGCATGCCTGCACCTTCAACGTTTACAGCCATGACATGAGTCGACAGATCGAGGCTCATCATTACATCACTCGCCTGAATCAAGATTTCCTCCAATGCGCCGTTTACGACTC...

CDS

Download CDS FASTA

828 bp · LXL04_027444|LXL04_027444|OH1004|CDS

ATGATGACTTCCAGCGATAAAGCTCCCGATGCGATGCCGACGGGCGACGGATCTGTCCCGCCGGGAAAACCCATGACGGTGGGAGATCAAGTTCTCGACAAAAGTGCTCAGATTCTGCAATCTTTGAAGCCCATTAAACAAATGAGCATGCATGCCTGCACCTTCAACGTTTACAGCCATGACATGAGTCGACAGATCGAGGCTCATCATTACATCACTCGCCTGAATCAAGATTTCCTCCAATGCGCCGTTTACGACTC...

Protein

Download Protein FASTA

275 aa · LXL04_027444|LXL04_027444|OH1004|PROTEIN

MMTSSDKAPDAMPTGDGSVPPGKPMTVGDQVLDKSAQILQSLKPIKQMSMHACTFNVYSHDMSRQIEAHHYITRLNQDFLQCAVYDSDDPSAHLIGVEYIVSDRIFDTLSTDEQKLWHSHDHEVTSGLWVCPGVPEMLNRTELENLAHTYGKFWCTWQVDRGKTRSSFLLSFSLRHLKGEKRIWNILCDRLPLGAPALMMSPQVVNMGVVQPELVRVRDNKYKISTDELRKSRADIPVSKPGNARASDFWMQNGKGYAID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027444`
TK1151 ID	TkA07G059800
OH-1004 ID	LXL04_027444
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027444

Location Chr06:16161622-16163032 (+)

Description Similar to OBAP2A: Oil body-associated protein 2A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45690`	Oil body-associated protein 2A.	No verified direct reference in this release
`At4g18920`	Oil body-associated protein 2B.	No verified direct reference in this release
`At1g29680`	Oil body-associated protein 2C.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027444 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G29680

ath:AT4G18920

ath:AT5G45690

zma:100274115

zma:100286341

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.544

Rank 1 · LXL04_027444 · OH-1004

Cytoplasm0.447

Rank 2 · LXL04_027444 · OH-1004

Mitochondrion0.080

Rank 3 · LXL04_027444 · OH-1004

Cell membrane0.058

Rank 4 · LXL04_027444 · OH-1004

Endoplasmic reticulum0.046

Rank 5 · LXL04_027444 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06884.17DUF126443-163 aa

PF06884.17DUF1264184-236 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027444	`PF06884.17`	DUF1264	43	163	5.1e-64	215.7
LXL04_027444	`PF06884.17`	DUF1264	184	236	5.1e-64	215.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q941A4`	Arabidopsis thaliana	Oil body-associated protein 2A	53.704%	Swiss-Prot	strong database homology
`Q1PE68`	Arabidopsis thaliana	Oil body-associated protein 2B	49.814%	Swiss-Prot	moderate database homology
`Q9C7N3`	Arabidopsis thaliana	Oil body-associated protein 2C	50.388%	Swiss-Prot	strong database homology

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