Gene Card
Gene overview
cDNA / CDS / Protein Sequences
249 bp · LXL04_027318|LXL04_027318|OH1004|cDNA
ATGTGCTGTTGTGGCGGTGACGACGATGACTGTAAATGCAGACCGTTAGGGTTCCTTTTAGGCCTGCCGTTCGCCTTCGTAGCTCTCCTCCTCACCATCGTCGGCGTCGTCATCTGGATCGTCGGGTTGATCTTGAGCTGTTTATGCCCTTGTTGTTTCTGTGTAACGGTGATCGTAGAGTTGGCGATATCGTTGATCAAAGCTCCATTTTCTGTCATGAAATGGTTTACGGAACAAATTCCTTGTTAG
249 bp · LXL04_027318|LXL04_027318|OH1004|CDS
ATGTGCTGTTGTGGCGGTGACGACGATGACTGTAAATGCAGACCGTTAGGGTTCCTTTTAGGCCTGCCGTTCGCCTTCGTAGCTCTCCTCCTCACCATCGTCGGCGTCGTCATCTGGATCGTCGGGTTGATCTTGAGCTGTTTATGCCCTTGTTGTTTCTGTGTAACGGTGATCGTAGAGTTGGCGATATCGTTGATCAAAGCTCCATTTTCTGTCATGAAATGGTTTACGGAACAAATTCCTTGTTAG
Protein
Download Protein FASTA82 aa · LXL04_027318|LXL04_027318|OH1004|PROTEIN
MCCCGGDDDDCKCRPLGFLLGLPFAFVALLLTIVGVVIWIVGLILSCLCPCCFCVTVIVELAISLIKAPFSVMKWFTEQIPC
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027318 |
|---|---|
| TK1151 ID | TkA05G306350 |
| OH-1004 ID | LXL04_027318 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 98.800 |
| Protein coverage (%) | TK1151 63.566 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027318 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:13492419-13492907 (+) | |||||||||
| Description | Similar to TAX1: Signaling peptide TAXIMIN 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009416 response to light stimulus Biological Process GO:0010199 organ boundary specification between lateral organs and the meristem Biological Process GO:0048530 fruit morphogenesis Biological Process GO:0005615 extracellular space Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G20562 ath:AT2G31090 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28483.1TAXIMIN7-82 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027318 | PF28483.1 | TAXIMIN | 7 | 82 | 6.8e-37 | 126.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.