LXL04_027256 | RubberDandelionOmics

Gene overview

LXL04_027256

Reference: OH-1004 Chr: Chr06 Coordinates: 12003166-12007205 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1696 bp · LXL04_027256|LXL04_027256|OH1004|cDNA

ATGTCGGTGGTACGGTGGTTATTGGTGGCGCTAGTAGTGGTTTTTAGCATTGAAGAAGTTCGATCGGATGCCTCCGATCACAAATACAAATCTGGTGATGAAGTTCCAATTTACGCCAACAAAGTCGGTCCGTTCCATAACCCGAGCCCATTTAAAGGAGAAACCAGAAGCTCTTGGTGAAGTACGGAATGGAGATCGTCTAGTCAGTGCTCCATATAAGCTCGACTTCATGGTTGAAAAAGACTCTGAAATAGGAAAGt...

CDS

Download CDS FASTA

1647 bp · LXL04_027256|LXL04_027256|OH1004|CDS

TTGAAGAAGTTCGATCGGATGCCTCCGATCACAAATACAAATCTGGTGATGAAGTTCCAATTTACGCCAACAAAGTCGGTCCGTTCCATAACCCGAGCCCATTTAAAGGAGAAACCAGAAGCTCTTGGTGAAGTACGGAATGGAGATCGTCTAGTCAGTGCTCCATATAAGCTCGACTTCATGGTTGAAAAAGACTCTGAAATAGGAAAGTTGAAAAAGACAAAAAACGACCCTAGTGAGGAAAGAAGCTACCTCTTTAA...

Protein

Download Protein FASTA

548 aa · LXL04_027256|LXL04_027256|OH1004|PROTEIN

MKKFDRMPPITNTNLVMKFQFTPTKSVRSITRAHLKEKPEALGEVRNGDRLVSAPYKLDFMVEKDSEIGKLKKTKNDPSEERSYLFKHLHFEILYNKDRVIEINAKADPNAVADLSEDKEVEVEFMYTVRWKETNIPFENRMEKYSQSSSQPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAADDQEETGWKYIHGDVFRYPKFKSLFVAALGSGTQLFAFALFIFIVALVGVFYPYNQGALFTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027256`
TK1151 ID	TkA01G398400
OH-1004 ID	LXL04_027256
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.900
Protein coverage (%)	TK1151 84.028 / OH-1004 78.285 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027256

Location Chr06:12003166-12007205 (-)

Description Similar to TMN2: Transmembrane 9 superfamily member 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14670`	Transmembrane 9 superfamily member 2.	No verified direct reference in this release
`At2g01970`	Transmembrane 9 superfamily member 3.	No verified direct reference in this release
`At5g37310`	Transmembrane 9 superfamily member 4.	No verified direct reference in this release
`At1g08350`	Transmembrane 9 superfamily member 5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027256 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006909 phagocytosis Biological Process

GO:0009624 response to nematode Biological Process

GO:0019954 asexual reproduction Biological Process

GO:0031589 cell-substrate adhesion Biological Process

GO:0033299 secretion of lysosomal enzymes Biological Process

GO:0061025 membrane fusion Biological Process

GO:0072657 protein localization to membrane Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G08350

ath:AT1G14670

ath:AT2G01970

ath:AT5G37310

ddi:DDB_G0277273

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.353

Rank 1 · LXL04_027256 · OH-1004

Cell membrane0.206

Rank 2 · LXL04_027256 · OH-1004

Golgi apparatus0.184

Rank 3 · LXL04_027256 · OH-1004

Lysosome / Vacuole0.183

Rank 4 · LXL04_027256 · OH-1004

Cytoplasm0.160

Rank 5 · LXL04_027256 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02990.22EMP7067-354 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027256	`PF02990.22`	EMP70	67	354	2.6e-91	307.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940S0`	Arabidopsis thaliana	Transmembrane 9 superfamily member 2	71.625%	Swiss-Prot	moderate database homology
`Q9ZPS7`	Arabidopsis thaliana	Transmembrane 9 superfamily member 3	71.625%	Swiss-Prot	moderate database homology
`Q9FHT4`	Arabidopsis thaliana	Transmembrane 9 superfamily member 4	69.482%	Swiss-Prot	moderate database homology
`F4HW17`	Arabidopsis thaliana	Transmembrane 9 superfamily member 5	41.667%	Swiss-Prot	moderate database homology

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