LXL04_027038 | RubberDandelionOmics

Gene overview

LXL04_027038

Reference: OH-1004 Chr: Chr06 Coordinates: 7553498-7557056 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2298 bp · LXL04_027038|LXL04_027038|OH1004|cDNA

ATGGCCACATTCGGGGATATTGGGGTAGCGGCTGCAATTAATATCATTACGGCCTTCATTTTTCTAATAGCATTTGCTATCTTGCGCCTTCAACCTGTGAACGATAGAGTATACTTTCCAAAATGGTATATCAAGGGTTTAAGGACAAGCCCAACAGCCTCAGGGGCATTTGTGAGAAAGTTTGTTAATTTGGATTATCGGTCATACTTAAAGTTTCTTAATTGGGTCCCAGATGCACTAAGAATGCCTGAATCCGAGCT...

CDS

Download CDS FASTA

2298 bp · LXL04_027038|LXL04_027038|OH1004|CDS

ATGGCCACATTCGGGGATATTGGGGTAGCGGCTGCAATTAATATCATTACGGCCTTCATTTTTCTAATAGCATTTGCTATCTTGCGCCTTCAACCTGTGAACGATAGAGTATACTTTCCAAAATGGTATATCAAGGGTTTAAGGACAAGCCCAACAGCCTCAGGGGCATTTGTGAGAAAGTTTGTTAATTTGGATTATCGGTCATACTTAAAGTTTCTTAATTGGGTCCCAGATGCACTAAGAATGCCTGAATCCGAGCT...

Protein

Download Protein FASTA

765 aa · LXL04_027038|LXL04_027038|OH1004|PROTEIN

MATFGDIGVAAAINIITAFIFLIAFAILRLQPVNDRVYFPKWYIKGLRTSPTASGAFVRKFVNLDYRSYLKFLNWVPDALRMPESELIDHAGLDSAVYLRIYLLGLKIFVPIFLLTWAVLIPVNLTNDTLERSKETFSQIDKLSISNIPHGSPRFWAHVAMAYIVMIWTCFMLKREYQTIANMRFYFLQSEKPRADQFTVLAKNVPRDANETISETVENFFLVNHHDNYLTHQVVCNANKLAKLIKKKLKQQNWLDYYQI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027038`
TK1151 ID	TkA07G027280
OH-1004 ID	LXL04_027038
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_027038

Location Chr06:7553498-7557056 (+)

Description Similar to CSC1: Calcium permeable stress-gated cation channel 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g22120`	Acts as an osmosensitive calcium-permeable cation channel.	OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844 Structure-guided mutagenesis of OSCAs reveals differential activation to mechanical stimuli.2024 · DOI: 10.7554/elife.93147
`At4g04340`	May act as a hyperosmolarity-gated nonselective cation channel permeable to Ca²⁺.	OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis.2014 · DOI: 10.1038/nature13593 OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels.2018 · DOI: 10.7554/elife.41844
`At3g21620`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g11960`	Calcium-permeable channel that plays a key role in plant stomatal immunity.	The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity.2020 · DOI: 10.1038/s41586-020-2702-1
`At1g62320`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027038 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006812 monoatomic cation transport Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0010118 stomatal movement Biological Process

GO:0045087 innate immune response Biological Process

GO:0051262 protein tetramerization Biological Process

GO:0071474 cellular hyperosmotic response Biological Process

GO:0090279 regulation of calcium ion import Biological Process

GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G11960

ath:AT1G62320

ath:AT3G21620

ath:AT4G04340

ath:AT4G22120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.850

Rank 1 · LXL04_027038 · OH-1004

Cytoplasm0.124

Rank 2 · LXL04_027038 · OH-1004

Endoplasmic reticulum0.062

Rank 3 · LXL04_027038 · OH-1004

Golgi apparatus0.033

Rank 4 · LXL04_027038 · OH-1004

Lysosome / Vacuole0.033

Rank 5 · LXL04_027038 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13967.12RSN1_TM7-176 aa

PF14703.13PHM7_cyt197-359 aa

PF02714.21RSN1_7TM370-642 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027038	`PF13967.12`	RSN1_TM	7	176	1.3e-44	152.3
LXL04_027038	`PF14703.13`	PHM7_cyt	197	359	2e-45	155.9
LXL04_027038	`PF02714.21`	RSN1_7TM	370	642	4.6e-86	289.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5XEZ5`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.2	70.143%	Swiss-Prot	strong database homology
`Q9XEA1`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.1	71.053%	Swiss-Prot	strong database homology
`Q9LVE4`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.5	68.915%	Swiss-Prot	strong database homology
`B5TYT3`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.3	66.142%	Swiss-Prot	strong database homology
`F4HYR3`	Arabidopsis thaliana	Hyperosmolality-gated Ca2+ permeable channel 1.4	66.324%	Swiss-Prot	strong database homology

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