LXL04_026897 | RubberDandelionOmics

Gene overview

LXL04_026897

Reference: OH-1004 Chr: Chr06 Coordinates: 4962825-4964006 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1182 bp · LXL04_026897|LXL04_026897|OH1004|cDNA

ATGGAAGCTGGTTGGCGGAGATCTTTCAGTTCCAGTTGCAGTGGCGGCGACGGCGGAgtcggtggtggtggtggcggcggTGACAGCGGGGGACAGAATGGTAATTTCGCAGCAAACAATGCATGGGATATCTGGGACATTGGTAgtactactactactactactaaCACTGCTGCTGGTACACGTTATGATTGGGGCAATCACggcaccaccgccgccgccagGGGAACGGAGGAGAGTGTTGTCCACGCGCTTTTATT...

CDS

Download CDS FASTA

1182 bp · LXL04_026897|LXL04_026897|OH1004|CDS

ATGGAAGCTGGTTGGCGGAGATCTTTCAGTTCCAGTTGCAGTGGCGGCGACGGCGGAGTCGGTGGTGGTGGTGGCGGCGGTGACAGCGGGGGACAGAATGGTAATTTCGCAGCAAACAATGCATGGGATATCTGGGACATTGGTAGTACTACTACTACTACTACTAACACTGCTGCTGGTACACGTTATGATTGGGGCAATCACGGCACCACCGCCGCCGCCAGGGGAACGGAGGAGAGTGTTGTCCACGCGCTTTTATT...

Protein

Download Protein FASTA

393 aa · LXL04_026897|LXL04_026897|OH1004|PROTEIN

MEAGWRRSFSSSCSGGDGGVGGGGGGGDSGGQNGNFAANNAWDIWDIGSTTTTTTNTAAGTRYDWGNHGTTAAARGTEESVVHALLFGMGNDNAAIQNAVVGSNAIRQRMPDPHMMCLKLGKRHYCECSVVPDRHTAEDSSSSSTKRGKPPYPYHMTDIATTTTITVWPASTPAAQPPRCQVEGCGVSLSNTKEYYRRHKVCEIHSKAPKVVVLGLQQRFCQQCSRFHGVTEFDEAKRSCRRRLEGHNQRRRKGTIPNSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026897`
TK1151 ID	TkA07G016570
OH-1004 ID	LXL04_026897
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 85.473 / OH-1004 64.377 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026897

Location Chr06:4962825-4964006 (+)

Description Similar to SPL7: Squamosa promoter-binding-like protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g27370`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q01JD1`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`Os04g0551500`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`UniProt: A2YGR5`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release
`Os06g0703500`	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026897 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010262 somatic embryogenesis Biological Process

GO:0010358 leaf shaping Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0090356 negative regulation of auxin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G27370

dosa:Os04g0551500

dosa:Os06g0703500

osa:4341986

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919

Rank 1 · LXL04_026897 · OH-1004

Cytoplasm0.139

Rank 2 · LXL04_026897 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_026897 · OH-1004

Endoplasmic reticulum0.024

Rank 4 · LXL04_026897 · OH-1004

Plastid0.016

Rank 5 · LXL04_026897 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03110.20SBP180-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026897	`PF03110.20`	SBP	180	253	8.4e-33	113.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S9L0`	Arabidopsis thaliana	Squamosa promoter-binding-like protein 10	45.679%	Swiss-Prot	weak database homology
`Q01JD1`	Oryza sativa subsp. indica	Squamosa promoter-binding-like protein 7	54.140%	Swiss-Prot	weak database homology
`Q7XT42`	Oryza sativa subsp. japonica	Squamosa promoter-binding-like protein 7	54.140%	Swiss-Prot	weak database homology
`A2YGR5`	Oryza sativa subsp. indica	Squamosa promoter-binding-like protein 12	44.848%	Swiss-Prot	weak database homology
`Q5Z818`	Oryza sativa subsp. japonica	Squamosa promoter-binding-like protein 12	44.848%	Swiss-Prot	weak database homology

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