Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1047 bp · LXL04_026789|LXL04_026789|OH1004|cDNA
ATGGCTTCTAAACTAAAAGGTGTTGAAAAATCAACGACCAATCAACAACGAAAACTATTATGCGAGTATCAGAGAGATCACAAAGCATGCACTCAACAAGATTTGGTGAAGTGGGTTGAAAAAACTTTCGATTTGAAAGTTAGTAAAGGAACAATATCAAACACTCTTAAGAGATCATCGGAGCTCCTATCGGCAAACTTTGACAAAGATGGATCGTCCAAGCGTCACAAAGCAGCCAAGTATCCGGAGATGGAGAAAGT...
1047 bp · LXL04_026789|LXL04_026789|OH1004|CDS
ATGGCTTCTAAACTAAAAGGTGTTGAAAAATCAACGACCAATCAACAACGAAAACTATTATGCGAGTATCAGAGAGATCACAAAGCATGCACTCAACAAGATTTGGTGAAGTGGGTTGAAAAAACTTTCGATTTGAAAGTTAGTAAAGGAACAATATCAAACACTCTTAAGAGATCATCGGAGCTCCTATCGGCAAACTTTGACAAAGATGGATCGTCCAAGCGTCACAAAGCAGCCAAGTATCCGGAGATGGAGAAAGT...
Protein
Download Protein FASTA348 aa · LXL04_026789|LXL04_026789|OH1004|PROTEIN
MASKLKGVEKSTTNQQRKLLCEYQRDHKACTQQDLVKWVEKTFDLKVSKGTISNTLKRSSELLSANFDKDGSSKRHKAAKYPEMEKVVFEWFLQHQERVNITGELIIEKAVETLKLLYPQDSSEHKLSQGWLEKFKLRHGIKSYRRFGESGSVDTHDMEKKLESIMEKINQFRMKYVFNMDETGLFYRLQADHSLATKQLEGRKQDKERLTIVICCNADGSEKIPLWIIGKYAKSRCFKNVNMNSLDCEYHANKRAWMTG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026789 |
|---|---|
| TK1151 ID | TkA01G507780 |
| OH-1004 ID | LXL04_026789 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 95.900 |
| Protein coverage (%) | TK1151 53.704 / OH-1004 41.667Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026789 |
|---|---|
| Location | Chr06:2913600-2914646 (+) |
| Description | Similar to cbh2: CENP-B homolog protein 2 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0061188 negative regulation of rDNA heterochromatin formation Biological Process GO:0000775 chromosome, centromeric region Cellular Component GO:0000779 condensed chromosome, centromeric region Cellular Component GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0031934 mating-type region heterochromatin Cellular Component GO:0003677 DNA binding Molecular Function GO:0019237 centromeric DNA binding Molecular Function GO:0043565 sequence-specific DNA binding Molecular Function GO:0140463 chromatin-protein adaptor activity Molecular Function |
| KEGG gene cross-reference | hsa:81789 mmu:403175 spo:2539728 spo:2539971 spo:2543290 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03221.23HTH_Tnp_Tc581-143 aaPF03184.26DDE_1207-342 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026789 | PF03221.23 | HTH_Tnp_Tc5 | 81 | 143 | 6e-14 | 52.5 |
| LXL04_026789 | PF03184.26 | DDE_1 | 207 | 342 | 1.2e-45 | 156.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.