LXL04_026753 | RubberDandelionOmics

Gene overview

LXL04_026753

Reference: OH-1004 Chr: Chr06 Coordinates: 2489520-2490584 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

855 bp · LXL04_026753|LXL04_026753|OH1004|cDNA

ATGGGAGCTAATTCATCACTACTAAGTCCCGACAGTTCAGATGGCTCTAACCATCCATCAAAGCTCAAGCTCGGTGAAATCCCGGAATCATGCGTTGCTCTGGTCTTATCATACTTAGATCCGCCGGAGATTTGCAAATTGGCGAGACTCAATCGAGCATTCAGAGCTGCTTCCTCTGCTGATTTCATCTGGGACGCGAAATTGCCTTCCAATTATCATCATCTCGTCGACGAATACCTAACGAAGAACCCTAGCAAATT...

CDS

Download CDS FASTA

855 bp · LXL04_026753|LXL04_026753|OH1004|CDS

ATGGGAGCTAATTCATCACTACTAAGTCCCGACAGTTCAGATGGCTCTAACCATCCATCAAAGCTCAAGCTCGGTGAAATCCCGGAATCATGCGTTGCTCTGGTCTTATCATACTTAGATCCGCCGGAGATTTGCAAATTGGCGAGACTCAATCGAGCATTCAGAGCTGCTTCCTCTGCTGATTTCATCTGGGACGCGAAATTGCCTTCCAATTATCATCATCTCGTCGACGAATACCTAACGAAGAACCCTAGCAAATT...

Protein

Download Protein FASTA

284 aa · LXL04_026753|LXL04_026753|OH1004|PROTEIN

MGANSSLLSPDSSDGSNHPSKLKLGEIPESCVALVLSYLDPPEICKLARLNRAFRAASSADFIWDAKLPSNYHHLVDEYLTKNPSKLGKNDVYARLALPVAFDSGNKEFWLDKRTGGICLSISSKALTITGIDDRRYWNYIPTDESRFHTIAYLQQIWWLEVEGDLDFHFPAGTYSLLFKLRLGRFTKRPGRRVVNHESVHGWDIKPVQFQLTTSDGQHAISKCFLENTGTWEYHHVGDFTVDDPNISTKIKFSLTQIDC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026753`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026753

Location Chr06:2489520-2490584 (+)

Description Similar to PP2A13: F-box protein PP2-A13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61060`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g12710`	F-box protein PP2-A12.	No verified direct reference in this release
`At3g53000`	F-box protein PP2-A15.	No verified direct reference in this release
`At1g63090`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g52120`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026753 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G12710

ath:AT1G63090

ath:AT3G53000

ath:AT3G61060

ath:AT5G52120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.530

Rank 1 · LXL04_026753 · OH-1004

Nucleus0.502

Rank 2 · LXL04_026753 · OH-1004

Cell membrane0.080

Rank 3 · LXL04_026753 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_026753 · OH-1004

Lysosome / Vacuole0.047

Rank 5 · LXL04_026753 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14299.14PP2118-276 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026753	`PF14299.14`	PP2	118	276	6.2e-37	127.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LEX0`	Arabidopsis thaliana	F-box protein PP2-A13	60.627%	Swiss-Prot	strong database homology
`Q9LN77`	Arabidopsis thaliana	F-box protein PP2-A12	57.721%	Swiss-Prot	strong database homology
`Q9LF92`	Arabidopsis thaliana	F-box protein PP2-A15	51.370%	Swiss-Prot	strong database homology
`Q9CAN4`	Arabidopsis thaliana	F-box protein PP2-A11	54.448%	Swiss-Prot	strong database homology
`Q9FJ80`	Arabidopsis thaliana	F-box protein PP2-A14	53.462%	Swiss-Prot	strong database homology

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