LXL04_026735 | RubberDandelionOmics

Gene overview

LXL04_026735

Reference: OH-1004 Chr: Chr06 Coordinates: 2159468-2161650 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · LXL04_026735|LXL04_026735|OH1004|cDNA

ATGGCAACTGAGCTACCTGCAAAAGTCGAGCCGGAATTGGCACCGGAGAAGGTTGAGGCTCCTGTTGTTGTTGCACCGGAGAAGCCTGTAGATCCTCCAGCAGCTGTACCTGAAACAAAGGCCGATGATTTGAAGGCGGTCGCCGTTGCTGACAAGACTCCGGTGAAGAAAGCTTCAAAGAACTCTCTTGAAAGAGATATCGCATTAGCTGGGGTTGATAAGGAGAAGAAATTGTCTTTCATCAAGGCTTGGGAAGAAAG...

CDS

Download CDS FASTA

567 bp · LXL04_026735|LXL04_026735|OH1004|CDS

ATGGCAACTGAGCTACCTGCAAAAGTCGAGCCGGAATTGGCACCGGAGAAGGTTGAGGCTCCTGTTGTTGTTGCACCGGAGAAGCCTGTAGATCCTCCAGCAGCTGTACCTGAAACAAAGGCCGATGATTTGAAGGCGGTCGCCGTTGCTGACAAGACTCCGGTGAAGAAAGCTTCAAAGAACTCTCTTGAAAGAGATATCGCATTAGCTGGGGTTGATAAGGAGAAGAAATTGTCTTTCATCAAGGCTTGGGAAGAAAG...

Protein

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188 aa · LXL04_026735|LXL04_026735|OH1004|PROTEIN

MATELPAKVEPELAPEKVEAPVVVAPEKPVDPPAAVPETKADDLKAVAVADKTPVKKASKNSLERDIALAGVDKEKKLSFIKAWEESEKSKVENKSQKELSSILSWENTKKADIEAKLKQIEEKYDKKKAEYAEKMKNKVGMIHKKAEEKRADVEAQKAEDNLKTEELAAKYRATGTIPKSALGCFGG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026735`
TK1151 ID	TkA07G004740
OH-1004 ID	LXL04_026735
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.300
Protein coverage (%)	TK1151 95.804 / OH-1004 72.872 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026735

Location Chr06:2159468-2161650 (-)

Description Similar to At3g61260: Uncharacterized protein At3g61260

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61260`	Uncharacterized protein At3g61260.	No verified direct reference in this release
`At2g45820`	Exhibits a non sequence-specific DNA-binding activity.	No verified direct reference in this release
`At5g23750`	Remorin 1.4.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0569100`	Functions in abscisic acid (ABA) signaling downstream of BZIP23.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.2016 · DOI: 10.1016/j.devcel.2016.06.011

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026735 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007267 cell-cell signaling Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010555 response to mannitol Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051665 membrane raft localization Biological Process

GO:1900458 negative regulation of brassinosteroid mediated signaling pathway Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G45820

ath:AT3G61260

ath:AT5G23750

dosa:Os07g0569100

sot:102577743

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.401

Rank 1 · LXL04_026735 · OH-1004

Cell membrane0.391

Rank 2 · LXL04_026735 · OH-1004

Nucleus0.204

Rank 3 · LXL04_026735 · OH-1004

Mitochondrion0.077

Rank 4 · LXL04_026735 · OH-1004

Endoplasmic reticulum0.072

Rank 5 · LXL04_026735 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03766.19Remorin_N24-72 aa

PF03763.19Remorin_C76-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026735	`PF03766.19`	Remorin_N	24	72	1e-06	29.4
LXL04_026735	`PF03763.19`	Remorin_C	76	180	6.6e-34	116.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2D8`	Arabidopsis thaliana	Uncharacterized protein At3g61260	58.333%	Swiss-Prot	strong database homology
`O80837`	Arabidopsis thaliana	Remorin	57.609%	Swiss-Prot	strong database homology
`Q9FFA5`	Arabidopsis thaliana	Remorin 1.4	64.286%	Swiss-Prot	moderate database homology
`Q7XII4`	Oryza sativa subsp. japonica	Remorin 4.1	36.842%	Swiss-Prot	moderate database homology

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