LXL04_026734 | RubberDandelionOmics

Gene overview

LXL04_026734

Reference: OH-1004 Chr: Chr06 Coordinates: 2156874-2159116 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

834 bp · LXL04_026734|LXL04_026734|OH1004|cDNA

ATGGTGAGAGCGCCATGCTGCGAGAAGACAGGAGTGAAGCGAGGTCCATGGGCGCAGGAAGAAGACGACCTTCTGATCGATTACATCAACAAAAACGGCCATGGAAGCTGGCGATCTCTACCTAAACTCGCTGGTCTTCTTCGTTGTGGGAAGAGTTGTCGTCTCCGGTGGACAAACTACCTCCGGCCAGACATCAAACGTGGTCCCTTCACCCCCGAAGAAGAAAAACTTGTCCTCCGATTACACGCCATACTTGGCAA...

CDS

Download CDS FASTA

834 bp · LXL04_026734|LXL04_026734|OH1004|CDS

ATGGTGAGAGCGCCATGCTGCGAGAAGACAGGAGTGAAGCGAGGTCCATGGGCGCAGGAAGAAGACGACCTTCTGATCGATTACATCAACAAAAACGGCCATGGAAGCTGGCGATCTCTACCTAAACTCGCTGGTCTTCTTCGTTGTGGGAAGAGTTGTCGTCTCCGGTGGACAAACTACCTCCGGCCAGACATCAAACGTGGTCCCTTCACCCCCGAAGAAGAAAAACTTGTCCTCCGATTACACGCCATACTTGGCAA...

Protein

Download Protein FASTA

277 aa · LXL04_026734|LXL04_026734|OH1004|PROTEIN

MVRAPCCEKTGVKRGPWAQEEDDLLIDYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVLRLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLVSMGIDPQTHEPSHADGSLKRLPASPSTRHMAQWETARLEAEARLSVLSSPKRTNSDYFLRIWQSEAGECFRRNIKGKLDCFSPSSQAIKGKLDCCFSPASQASGSGITEPEPTPEATTTTTVFYPGSSPSEMEDSSDTALELF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026734`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026734

Location Chr06:2156874-2159116 (+)

Description Similar to MYB17: Transcription factor MYB17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61250`	Transcription factor that may play a role in flower development by repressing ANT.	Characterization of Arabidopsis MYB transcription factor gene AtMYB17 and its possible regulation by LEAFY and AGL15.2009 · DOI: 10.1016/s1673-8527(08)60096-x LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1.2011 · DOI: 10.1242/dev.063073
`At3g01140`	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation.	Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.2008 · DOI: 10.1104/pp.108.126979 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At5g15310`	Involved in the control of epidermal cell morphogenesis in petals.	Control of cell and petal morphogenesis by R2R3 MYB transcription factors.2007 · DOI: 10.1242/dev.02836 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At4g21440`	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable).	Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene.2003 · DOI: 10.1104/pp.102.019273 The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae.2006 · DOI: 10.4161/psb.1.6.3512
`At1g34670`	Transcription factor that acts as a negative regulator of lateral root (LR) development.	AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis.2014 · DOI: 10.1111/nph.12879

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026734 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000902 cell morphogenesis Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010091 trichome branching Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:1901332 negative regulation of lateral root development Biological Process

KEGG gene cross-reference

ath:AT1G34670

ath:AT3G01140

ath:AT3G61250

ath:AT4G21440

ath:AT5G15310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.895

Rank 1 · LXL04_026734 · OH-1004

Cytoplasm0.205

Rank 2 · LXL04_026734 · OH-1004

Mitochondrion0.027

Rank 3 · LXL04_026734 · OH-1004

Cell membrane0.022

Rank 4 · LXL04_026734 · OH-1004

Endoplasmic reticulum0.011

Rank 5 · LXL04_026734 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding14-61 aa

PF13921.13Myb_DNA-bind_617-76 aa

PF00249.38Myb_DNA-binding67-112 aa

PF13921.13Myb_DNA-bind_670-114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026734	`PF00249.38`	Myb_DNA-binding	14	61	5.4e-35	120.0
LXL04_026734	`PF13921.13`	Myb_DNA-bind_6	17	76	1.1e-18	67.8
LXL04_026734	`PF00249.38`	Myb_DNA-binding	67	112	5.4e-35	120.0
LXL04_026734	`PF13921.13`	Myb_DNA-bind_6	70	114	1.1e-18	67.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2D9`	Arabidopsis thaliana	Transcription factor MYB17	58.503%	Swiss-Prot	strong database homology
`Q9LE63`	Arabidopsis thaliana	Transcription factor MYB106	65.244%	Swiss-Prot	moderate database homology
`Q9LXF1`	Arabidopsis thaliana	Transcription factor MYB16	65.854%	Swiss-Prot	moderate database homology
`Q9LDR8`	Arabidopsis thaliana	Transcription factor MYB102	70.312%	Swiss-Prot	weak database homology
`Q9S9Z2`	Arabidopsis thaliana	Transcription factor MYB93	54.187%	Swiss-Prot	strong database homology

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