LXL04_026730 | RubberDandelionOmics

Gene overview

LXL04_026730

Reference: OH-1004 Chr: Chr06 Coordinates: 2075510-2081445 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1593 bp · LXL04_026730|LXL04_026730|OH1004|cDNA

ATGGCGACGATGTTTCCAAAATGCGCCACAACCATGGCTTTGGCCTCTCCAAACATTGTATCATTAGGGCAGCCATTTTCGTCTCCTTCCGTAGCTCGATTTGGCCCATCTTCTCATAGGCTGAAGCCCAATTTCGTCGATTTCAGCTCCCGTACTCGAATTTCGGCTGCACCAAGTGAGTTTGCAGATTCCTCGGGTTTTAGTGATTCAGTTCGTACCTCTGATGAACATCAGGTTGTGGAGATTACCACAGAGGAGAG...

CDS

Download CDS FASTA

1593 bp · LXL04_026730|LXL04_026730|OH1004|CDS

ATGGCGACGATGTTTCCAAAATGCGCCACAACCATGGCTTTGGCCTCTCCAAACATTGTATCATTAGGGCAGCCATTTTCGTCTCCTTCCGTAGCTCGATTTGGCCCATCTTCTCATAGGCTGAAGCCCAATTTCGTCGATTTCAGCTCCCGTACTCGAATTTCGGCTGCACCAAGTGAGTTTGCAGATTCCTCGGGTTTTAGTGATTCAGTTCGTACCTCTGATGAACATCAGGTTGTGGAGATTACCACAGAGGAGAG...

Protein

Download Protein FASTA

530 aa · LXL04_026730|LXL04_026730|OH1004|PROTEIN

MATMFPKCATTMALASPNIVSLGQPFSSPSVARFGPSSHRLKPNFVDFSSRTRISAAPSEFADSSGFSDSVRTSDEHQVVEITTEERDFSGTPHVPVYVMLPLGIIDMECELINPDDLSNQLKILKSINVDGVMVDTWWGIVEANTPQQYNWKGYKKLFEIVRGLGLKLQVVMSFHECGGNVGDDVHIPLPKWVTKIGQENPDIYFTDRDGRRNPESLTWGIDKERVLKGRTAVEVYFEYMRSFRVEFDDFFQDETITEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026730`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026730

Location Chr06:2075510-2081445 (+)

Description Similar to BAM2: Beta-amylase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00490`	Low beta-amylase activity.	No verified direct reference in this release
`At2g45880`	Beta-amylase 7.	No verified direct reference in this release
`At5g45300`	Beta-amylase 8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026730 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000272 polysaccharide catabolic process Biological Process

GO:0005983 starch catabolic process Biological Process

GO:0048831 regulation of shoot system development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0016161 beta-amylase activity Molecular Function

GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function

KEGG gene cross-reference

ath:AT2G45880

ath:AT4G00490

ath:AT5G45300

gmx:547931

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.969

Rank 1 · LXL04_026730 · OH-1004

Mitochondrion0.045

Rank 2 · LXL04_026730 · OH-1004

Cytoplasm0.032

Rank 3 · LXL04_026730 · OH-1004

Peroxisome0.023

Rank 4 · LXL04_026730 · OH-1004

Nucleus0.022

Rank 5 · LXL04_026730 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01373.25Glyco_hydro_1498-523 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026730	`PF01373.25`	Glyco_hydro_14	98	523	9.1e-131	437.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65258`	Arabidopsis thaliana	Beta-amylase 2, chloroplastic	76.009%	Swiss-Prot	strong database homology
`O80831`	Arabidopsis thaliana	Beta-amylase 7	63.913%	Swiss-Prot	strong database homology
`Q9FH80`	Arabidopsis thaliana	Beta-amylase 8	55.679%	Swiss-Prot	strong database homology

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