Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1035 bp · LXL04_026729|LXL04_026729|OH1004|cDNA
ATGGTTTCAAATTCTTCTCTTCAAACAACACTAAACCTCCCATGTATAGACCTTTCAAAGCCATTACAACCTTCATCTATATCATCTCTTTCTCAAGCCTGTCATCAATGGGGGTTCTTCAATATTGTCAATCATGGAATCTCAAAGGACCTCTTTGAAAATATCCATTCTTTTTCTCATCAACTATTTGATCTCCCTAGTGAAACAAAGCTTAAACTTGGTCCTTCTTCCTCTATCAAAACTTACACTCCTCCATTCAT...
1035 bp · LXL04_026729|LXL04_026729|OH1004|CDS
ATGGTTTCAAATTCTTCTCTTCAAACAACACTAAACCTCCCATGTATAGACCTTTCAAAGCCATTACAACCTTCATCTATATCATCTCTTTCTCAAGCCTGTCATCAATGGGGGTTCTTCAATATTGTCAATCATGGAATCTCAAAGGACCTCTTTGAAAATATCCATTCTTTTTCTCATCAACTATTTGATCTCCCTAGTGAAACAAAGCTTAAACTTGGTCCTTCTTCCTCTATCAAAACTTACACTCCTCCATTCAT...
Protein
Download Protein FASTA344 aa · LXL04_026729|LXL04_026729|OH1004|PROTEIN
MVSNSSLQTTLNLPCIDLSKPLQPSSISSLSQACHQWGFFNIVNHGISKDLFENIHSFSHQLFDLPSETKLKLGPSSSIKTYTPPFIASPYFESFRVCGPDFHSSAQDSISVIFDEKPCEFSDILEDYGKTMSELSMNIMKIALMILGDGFDTRFYDSDFKNCHGYLRINRYSPTTNNSNKNETVEGLGMHTDMSCITIVYQDESGGLQVKSKEDGRWMDIAPSDGTLVVNIGDLLQAWSNNKLISSEHRVVFKKPVNRL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026729 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026729 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:2068848-2071253 (+) | |||||||||
| Description | Similar to At5g51310: Gibberellin 20-oxidase-like protein | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009686 gibberellin biosynthetic process Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0042617 paclitaxel biosynthetic process Biological Process GO:0048767 root hair elongation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0016491 oxidoreductase activity Molecular Function GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051213 dioxygenase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G55290 ath:AT5G51310 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N13-86 aaPF03171.272OG-FeII_Oxy167-267 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026729 | PF14226.13 | DIOX_N | 13 | 86 | 4.9e-18 | 66.6 |
| LXL04_026729 | PF03171.27 | 2OG-FeII_Oxy | 167 | 267 | 3.4e-24 | 85.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.