LXL04_026707 | RubberDandelionOmics

Gene overview

LXL04_026707

Reference: OH-1004 Chr: Chr06 Coordinates: 1732107-1736963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2340 bp · LXL04_026707|LXL04_026707|OH1004|cDNA

ATGAAGATGATCAAAGGGTTTGCAATGGCGGTGTTTGTAGGGTACCTTTTCCTATGGGTGATAACTCCAACCTACGTCTTCAAGCAAAAGTGGCTCGTTAGGGTTCGAGCCCACACTGCTTCTACTTACTTTGGAACTCAAGGTCCACCGATGTTACTCTATACATTTCCTATTCTCTTGATGGCTGTTGCCGGGAGTATATATCTCCATTTGAAGAAAAAGTCGAACCAAAACCGGGATCAAGGGCAAAAAGAAGCCAC...

CDS

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2340 bp · LXL04_026707|LXL04_026707|OH1004|CDS

ATGAAGATGATCAAAGGGTTTGCAATGGCGGTGTTTGTAGGGTACCTTTTCCTATGGGTGATAACTCCAACCTACGTCTTCAAGCAAAAGTGGCTCGTTAGGGTTCGAGCCCACACTGCTTCTACTTACTTTGGAACTCAAGGTCCACCGATGTTACTCTATACATTTCCTATTCTCTTGATGGCTGTTGCCGGGAGTATATATCTCCATTTGAAGAAAAAGTCGAACCAAAACCGGGATCAAGGGCAAAAAGAAGCCAC...

Protein

Download Protein FASTA

779 aa · LXL04_026707|LXL04_026707|OH1004|PROTEIN

MKMIKGFAMAVFVGYLFLWVITPTYVFKQKWLVRVRAHTASTYFGTQGPPMLLYTFPILLMAVAGSIYLHLKKKSNQNRDQGQKEATNDNLTIWRRPMIVKTLGIVTKIELAFFIMFIALLTWSFTEYLHLSLAKVTPQSAALYGEKIWEAKLATVGLQFGLIGNICLAFMFYPVTRGSSLLPLFGLTSEASVKYHIWLGHIVMTLFTSHGVCYIICWIATKQTSEMLNWAKTDISVVAGEVTLVAGLVMWATTFPKIRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026707`
TK1151 ID	TkA07G002890
OH-1004 ID	LXL04_026707
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 99.713 / OH-1004 89.345 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026707

Location Chr06:1732107-1736963 (+)

Description Similar to FRO2: Ferric reduction oxidase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01580`	Flavocytochrome that transfers electrons across the plasma membrane to reduce ferric iron chelates to form soluble ferrous iron in the rhizosphere.	A ferric-chelate reductase for iron uptake from soils.1999 · DOI: 10.1038/17800 Overexpression of the FRO2 ferric chelate reductase confers tolerance to growth on low iron and uncovers posttranscriptional control.2003 · DOI: 10.1104/pp.103.025122 Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci163 The FRO2 ferric reductase is required for glycine betaine's effect on chilling tolerance in Arabidopsis roots.2008 · DOI: 10.1111/j.1399-3054.2008.01141.x
`At1g01590`	Ferric chelate reductase involved in iron reduction in roots (By similarity).	No verified direct reference in this release
`At1g23020`	Ferric chelate reductase involved in iron reduction in roots.	Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci163
`At5g23980`	Ferric chelate reductase.	Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci163 Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis.2012 · DOI: 10.1105/tpc.111.090431
`At5g23990`	Ferric chelate reductase probably involved in iron reduction in shoots.	Molecular and biochemical characterization of the Fe(III) chelate reductase gene family in Arabidopsis thaliana.2005 · DOI: 10.1093/pcp/pci163 Transcriptome sequencing identifies SPL7-regulated copper acquisition genes FRO4/FRO5 and the copper dependence of iron homeostasis in Arabidopsis.2012 · DOI: 10.1105/tpc.111.090431

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026707 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0033212 iron import into cell Biological Process

GO:0033214 siderophore-iron import into cell Biological Process

GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0000293 ferric-chelate reductase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0140618 ferric-chelate reductase (NADH) activity Molecular Function

KEGG gene cross-reference

ath:AT1G01580

ath:AT1G01590

ath:AT1G23020

ath:AT5G23980

ath:AT5G23990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.480

Rank 1 · LXL04_026707 · OH-1004

Endoplasmic reticulum0.187

Rank 2 · LXL04_026707 · OH-1004

Lysosome / Vacuole0.151

Rank 3 · LXL04_026707 · OH-1004

Golgi apparatus0.096

Rank 4 · LXL04_026707 · OH-1004

Cytoplasm0.090

Rank 5 · LXL04_026707 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01794.26Ferric_reduct160-281 aa

PF08022.19FAD_binding_8314-410 aa

PF08030.18NAD_binding_6419-682 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026707	`PF01794.26`	Ferric_reduct	160	281	4.4e-20	72.7
LXL04_026707	`PF08022.19`	FAD_binding_8	314	410	9.5e-25	87.5
LXL04_026707	`PF08030.18`	NAD_binding_6	419	682	1.5e-23	84.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92949`	Arabidopsis thaliana	Ferric reduction oxidase 2	55.887%	Swiss-Prot	strong database homology
`Q9LMM2`	Arabidopsis thaliana	Probable ferric reduction oxidase 1	52.908%	Swiss-Prot	strong database homology
`F4I4K7`	Arabidopsis thaliana	Ferric reduction oxidase 3, mitochondrial	53.945%	Swiss-Prot	strong database homology
`Q8W110`	Arabidopsis thaliana	Ferric reduction oxidase 4	47.301%	Swiss-Prot	moderate database homology
`Q9FLW2`	Arabidopsis thaliana	Ferric reduction oxidase 5	46.648%	Swiss-Prot	moderate database homology

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