LXL04_026634 | RubberDandelionOmics

Gene overview

LXL04_026634

Reference: OH-1004 Chr: Chr06 Coordinates: 516165-517736 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1287 bp · LXL04_026634|LXL04_026634|OH1004|cDNA

ATGAAATTTTTTGACAAGGCTAGGGATATAGCAGCAACAGAGCCAAAGAAAGTGATTCATTGTCTGAAAGTTGGCATTGCTCTTTCTGTGGTCTCACTTTTCTATTACATGAGACCGCTCTATGATGGTCTAGGTGGCAATGCAATGTGGGCTGTCATGACCGTGGTTGTAGCTCTTGAATACTCTGTTGGTGCGACAATAGCCAAGTCTTGTAATCGAGTAGGTGCCACTTTGGTGGCGGGTTCCATAGGGCTCGGTGT...

CDS

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1287 bp · LXL04_026634|LXL04_026634|OH1004|CDS

ATGAAATTTTTTGACAAGGCTAGGGATATAGCAGCAACAGAGCCAAAGAAAGTGATTCATTGTCTGAAAGTTGGCATTGCTCTTTCTGTGGTCTCACTTTTCTATTACATGAGACCGCTCTATGATGGTCTAGGTGGCAATGCAATGTGGGCTGTCATGACCGTGGTTGTAGCTCTTGAATACTCTGTTGGTGCGACAATAGCCAAGTCTTGTAATCGAGTAGGTGCCACTTTGGTGGCGGGTTCCATAGGGCTCGGTGT...

Protein

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428 aa · LXL04_026634|LXL04_026634|OH1004|PROTEIN

MKFFDKARDIAATEPKKVIHCLKVGIALSVVSLFYYMRPLYDGLGGNAMWAVMTVVVALEYSVGATIAKSCNRVGATLVAGSIGLGVHWMANQCGQELQPLILQVSVFILASVATFSRFIPCVKARFDYGAMVFILTFSFVSMSGYRVDKLLELARNRVSTISLGTSICILISMLFYPVWAGKELHDHIYQNLQNLADSLDGCVADYFNHDDESFHGKKEGYKCVLNSRAIQVAKANLASWEPAHGPFRYRHPWKQYLKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026634`
TK1151 ID	TkA08G003550
OH-1004 ID	LXL04_026634
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_026634

Location Chr06:516165-517736 (-)

Description Similar to ALMT10: Aluminum-activated malate transporter 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00910`	Malate transporter.	No verified direct reference in this release
`At1g08440`	Malate transporter.	No verified direct reference in this release
`At2g27240`	Malate transporter.	No verified direct reference in this release
`At1g08430`	Malate transporter critical for aluminum tolerance.	AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis.2006 · DOI: 10.1073/pnas.0602868103 Characterization of AtALMT1 expression in aluminum-inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis.2007 · DOI: 10.1104/pp.107.102335 Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance.2009 · DOI: 10.1111/j.1365-313x.2008.03696.x STOP1 regulates multiple genes that protect arabidopsis from proton and aluminum toxicities.2009 · DOI: 10.1104/pp.108.134700

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026634 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010044 response to aluminum ion Biological Process

GO:0034220 monoatomic ion transmembrane transport Biological Process

GO:0071423 malate transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0015140 malate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G08430

ath:AT1G08440

ath:AT2G27240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.857

Rank 1 · LXL04_026634 · OH-1004

Endoplasmic reticulum0.099

Rank 2 · LXL04_026634 · OH-1004

Cytoplasm0.066

Rank 3 · LXL04_026634 · OH-1004

Nucleus0.033

Rank 4 · LXL04_026634 · OH-1004

Lysosome / Vacuole0.031

Rank 5 · LXL04_026634 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11744.15ALMT9-348 aa

PF13515.13FUSC_240-172 aa

PF04632.19FUSC47-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026634	`PF11744.15`	ALMT	9	348	1.7e-131	440.1
LXL04_026634	`PF13515.13`	FUSC_2	40	172	2.7e-08	34.7
LXL04_026634	`PF04632.19`	FUSC	47	204	1.1e-06	28.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23086`	Arabidopsis thaliana	Aluminum-activated malate transporter 10	51.577%	Swiss-Prot	strong database homology
`Q9SJE8`	Arabidopsis thaliana	Aluminum-activated malate transporter 2	41.832%	Swiss-Prot	moderate database homology
`Q9XIN1`	Arabidopsis thaliana	Aluminum-activated malate transporter 7	39.041%	Swiss-Prot	moderate database homology
`Q9SJE9`	Arabidopsis thaliana	Aluminum-activated malate transporter 1	40.534%	Swiss-Prot	moderate database homology

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