Gene Card
Gene overview
cDNA / CDS / Protein Sequences
684 bp · LXL04_026572|LXL04_026572|OH1004|cDNA
ATGGAATTGCATACTAGAATGGTGGTTTTTCCATTTCTCCCACACGGTTCATCAACTTACTTCATAATTGTCTTTAATTGTCTTTTGTTTTTCTTGCAGTTGGGAGCTCTTCTGGATGAAAGGTTTTTCAATTCTTGTTTAGTTCACCAAGAAGATAGAAAGAATGAAGAAAACAGCTTCTGTATGGACTGCTGTTTCAGTCTATGCATGCATTGCATGCCATATCACCAATCTCACAGGATTTTACAGATAAGGAGGTA...
684 bp · LXL04_026572|LXL04_026572|OH1004|CDS
ATGGAATTGCATACTAGAATGGTGGTTTTTCCATTTCTCCCACACGGTTCATCAACTTACTTCATAATTGTCTTTAATTGTCTTTTGTTTTTCTTGCAGTTGGGAGCTCTTCTGGATGAAAGGTTTTTCAATTCTTGTTTAGTTCACCAAGAAGATAGAAAGAATGAAGAAAACAGCTTCTGTATGGACTGCTGTTTCAGTCTATGCATGCATTGCATGCCATATCACCAATCTCACAGGATTTTACAGATAAGGAGGTA...
Protein
Download Protein FASTA227 aa · LXL04_026572|LXL04_026572|OH1004|PROTEIN
MELHTRMVVFPFLPHGSSTYFIIVFNCLLFFLQLGALLDERFFNSCLVHQEDRKNEENSFCMDCCFSLCMHCMPYHQSHRILQIRRYMYKDVLRLKDAHKIFDCSLIQVSYPDRSSTFVKTDFNLQFIVKKTYIPESKFDTHLFQFMVGELYYSLLAHHVIFVDNLQLSNESAYSCGERVHAYGSRGVGKTKSFLASVESSVEENSSNGFTRKSHGRKCVPQRSPLF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026572 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026572 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:128430065-128434130 (-) | ||||||
| Description | Protein of unknown function | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0010078 maintenance of root meristem identity Biological Process GO:0043434 response to peptide hormone Biological Process GO:2000280 regulation of root development Biological Process GO:2000377 regulation of reactive oxygen species metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0008270 zinc ion binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT2G12646 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q1G3Q4 | Arabidopsis thaliana | Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 | 53.947% | Swiss-Prot | weak database homology |