LXL04_026528 | RubberDandelionOmics

Gene overview

LXL04_026528

Reference: OH-1004 Chr: Chr05 Coordinates: 127860535-127862048 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · LXL04_026528|LXL04_026528|OH1004|cDNA

ATGGCGGTCTCTCTCAATTCCATCACGTGTTCCTCGTATTTACACCCGTCTCAGCCTTCTCTCAGCTGCGGAGACAAGGTTTTCGTTGGATTAAGACTTCAATCTCCTAATTCTTATGGAATTGCGAGACCTAATCTGAGTGCTGAATTGCACAAAAAAATTCATAAAAGTATTGAGCCAAGGATTGGGATTAAACCAGCAAGGGGACGCATCACCATGATGCCCATTGGAACTCCAAGAGTGCCTTATAGAGTACCTGG...

CDS

Download CDS FASTA

858 bp · LXL04_026528|LXL04_026528|OH1004|CDS

ATGGCGGTCTCTCTCAATTCCATCACGTGTTCCTCGTATTTACACCCGTCTCAGCCTTCTCTCAGCTGCGGAGACAAGGTTTTCGTTGGATTAAGACTTCAATCTCCTAATTCTTATGGAATTGCGAGACCTAATCTGAGTGCTGAATTGCACAAAAAAATTCATAAAAGTATTGAGCCAAGGATTGGGATTAAACCAGCAAGGGGACGCATCACCATGATGCCCATTGGAACTCCAAGAGTGCCTTATAGAGTACCTGG...

Protein

Download Protein FASTA

285 aa · LXL04_026528|LXL04_026528|OH1004|PROTEIN

MAVSLNSITCSSYLHPSQPSLSCGDKVFVGLRLQSPNSYGIARPNLSAELHKKIHKSIEPRIGIKPARGRITMMPIGTPRVPYRVPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDNSKRMYMYINGPGGDLTPSMAIYDTMQSLASPIGTHCVGYAYNLAGFLLAAGEKGQRFAMPLSRIALESPAGAARGQADDIQNEANELLRIRDYLFKELALKTGQPVEQVHKDFSRIKRFNAQEALDYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026528`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026528

Location Chr05:127860535-127862048 (-)

Description Similar to CLPR2: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12410`	Required for chloroplast development and integrity.	Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.2006 · DOI: 10.1105/tpc.106.042861

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026528 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009368 endopeptidase Clp complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009840 chloroplastic endopeptidase Clp complex Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0004176 ATP-dependent peptidase activity Molecular Function

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ana:all4357

ath:AT1G12410

ava:Ava_1305

tel:tlr1071

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.967

Rank 1 · LXL04_026528 · OH-1004

Mitochondrion0.035

Rank 2 · LXL04_026528 · OH-1004

Nucleus0.019

Rank 3 · LXL04_026528 · OH-1004

Cytoplasm0.011

Rank 4 · LXL04_026528 · OH-1004

Cell membrane0.010

Rank 5 · LXL04_026528 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00574.29CLP_protease92-267 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026528	`PF00574.29`	CLP_protease	92	267	3.6e-61	206.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XJ36`	Arabidopsis thaliana	ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic	70.383%	Swiss-Prot	strong database homology

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