LXL04_026473 | RubberDandelionOmics

Gene overview

LXL04_026473

Reference: OH-1004 Chr: Chr05 Coordinates: 126892630-126893412 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

783 bp · LXL04_026473|LXL04_026473|OH1004|cDNA

atgaagaagaagaagatcaaAGAATCATCCCGATCATCGAAGAAATGTGATTTGGAATCATCGGATTTCAACACGGCAGTCATGAGAATCGCAGTTGCACAGATGTGCCAGTCCGTCGGGTACCAAGGCGCACAAACCTCCGCACTCAAAACCCTAACGGACGTTGTTGTAAGGTACCTACGGTCACTGGGCAAGTTCGCCGCGACCTCCGCTGGTTCCACCGGTCGTACGCAGTGTAACCTTCTGGACATCGTCCGTGC...

CDS

Download CDS FASTA

783 bp · LXL04_026473|LXL04_026473|OH1004|CDS

ATGAAGAAGAAGAAGATCAAAGAATCATCCCGATCATCGAAGAAATGTGATTTGGAATCATCGGATTTCAACACGGCAGTCATGAGAATCGCAGTTGCACAGATGTGCCAGTCCGTCGGGTACCAAGGCGCACAAACCTCCGCACTCAAAACCCTAACGGACGTTGTTGTAAGGTACCTACGGTCACTGGGCAAGTTCGCCGCGACCTCCGCTGGTTCCACCGGTCGTACGCAGTGTAACCTTCTGGACATCGTCCGTGC...

Protein

Download Protein FASTA

260 aa · LXL04_026473|LXL04_026473|OH1004|PROTEIN

MKKKKIKESSRSSKKCDLESSDFNTAVMRIAVAQMCQSVGYQGAQTSALKTLTDVVVRYLRSLGKFAATSAGSTGRTQCNLLDIVRALEDLHSDIGFLGNSEPKRRLFLLSNSSILRDTMNFVYWSREIPFAKPLPRRSPTLPSNPPYFSDQNTKWNHIPRWLPDFPNAEEKTIVGSASEGENTFEKKMRSTELNTQMSKLPAKRKKISFKIGGGMNVNEIPFVVDLKSGVCKGGKRISCQIYDDDKFSNASSGSKKRIG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026473`
TK1151 ID	TkA06G011750
OH-1004 ID	LXL04_026473
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026473

Location Chr05:126892630-126893412 (+)

Description Similar to TAF8: Transcription initiation factor TFIID subunit 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34340`	TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026473 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006366 transcription by RNA polymerase II Biological Process

GO:0042789 mRNA transcription by RNA polymerase II Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process

GO:0051457 maintenance of protein location in nucleus Biological Process

GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005669 transcription factor TFIID complex Cellular Component

GO:0031965 nuclear membrane Cellular Component

KEGG gene cross-reference

ath:AT4G34340

gga:419107

hsa:83860

mmu:209361

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_026473 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_026473 · OH-1004

Cell membrane0.020

Rank 3 · LXL04_026473 · OH-1004

Endoplasmic reticulum0.012

Rank 4 · LXL04_026473 · OH-1004

Plastid0.011

Rank 5 · LXL04_026473 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07524.20Bromo_TP23-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026473	`PF07524.20`	Bromo_TP	23	91	1e-17	64.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SYZ9`	Arabidopsis thaliana	Transcription initiation factor TFIID subunit 8	37.297%	Swiss-Prot	moderate database homology

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