LXL04_026466 | RubberDandelionOmics

Gene overview

LXL04_026466

Reference: OH-1004 Chr: Chr05 Coordinates: 126813451-126816502 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2418 bp · LXL04_026466|LXL04_026466|OH1004|cDNA

ATGAACTCATCAGTTATCTTCTTAGAACGTTCTAGGATATTCCGCTACAATGTTCTGCACAATCTCACCTTCCTCCGCCACATGGGCGGCGGCCCACGGACGTTCCCTGGCGGCCTGAACAAATGGCAATGGAAGCGCCTCCACGAAAAGCAAGCCAGGGAGAAGGAAAAACGGCTTCTGGATCAAGAGAAACAGCTCTACCAGGCGCGGGTTCGATCCGAGATCCGCTCCAAACTCGCCAACCCAAATTCATCCCAACA...

CDS

Download CDS FASTA

2418 bp · LXL04_026466|LXL04_026466|OH1004|CDS

ATGAACTCATCAGTTATCTTCTTAGAACGTTCTAGGATATTCCGCTACAATGTTCTGCACAATCTCACCTTCCTCCGCCACATGGGCGGCGGCCCACGGACGTTCCCTGGCGGCCTGAACAAATGGCAATGGAAGCGCCTCCACGAAAAGCAAGCCAGGGAGAAGGAAAAACGGCTTCTGGATCAAGAGAAACAGCTCTACCAGGCGCGGGTTCGATCCGAGATCCGCTCCAAACTCGCCAACCCAAATTCATCCCAACA...

Protein

Download Protein FASTA

805 aa · LXL04_026466|LXL04_026466|OH1004|PROTEIN

MNSSVIFLERSRIFRYNVLHNLTFLRHMGGGPRTFPGGLNKWQWKRLHEKQAREKEKRLLDQEKQLYQARVRSEIRSKLANPNSSQHEQDTNSPNYKPLSPKEHIKVLADRFMKEGAEDLWNEADGPIHSPSRQDIARIESTHNPINLRRLVSGQNQITSNQLSEVSSAFSYNQLKPRHYSAFLHPGNQYGLLKARHYSVRTSRFTYRKSNSSSSEDDDTDEDEAFLMTKRKDVALKAPRLSLIGASDGEDTINDDVKGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026466`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026466

Location Chr05:126813451-126816502 (-)

Description Similar to RH48: Probable DEAD-box ATP-dependent RNA helicase 48

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63250`	Probable DEAD-box ATP-dependent RNA helicase 48.	No verified direct reference in this release
`At2g07750`	Putative DEAD-box ATP-dependent RNA helicase 33.	No verified direct reference in this release
`At5g08610`	DEAD-box ATP-dependent RNA helicase 26.	No verified direct reference in this release
`At5g63630`	DEAD-box ATP-dependent RNA helicase 31.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0826100`	DEAD-box ATP-dependent RNA helicase 48.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026466 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003724 RNA helicase activity Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT1G63250

ath:AT2G07750

ath:AT5G08610

dosa:Os02g0826100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.725

Rank 1 · LXL04_026466 · OH-1004

Plastid0.134

Rank 2 · LXL04_026466 · OH-1004

Nucleus0.123

Rank 3 · LXL04_026466 · OH-1004

Cytoplasm0.065

Rank 4 · LXL04_026466 · OH-1004

Peroxisome0.018

Rank 5 · LXL04_026466 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270.36DEAD352-539 aa

PF00271.38Helicase_C584-689 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026466	`PF00270.36`	DEAD	352	539	3.8e-42	144.6
LXL04_026466	`PF00271.38`	Helicase_C	584	689	1.1e-21	77.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C8S9`	Arabidopsis thaliana	Probable DEAD-box ATP-dependent RNA helicase 48	58.041%	Swiss-Prot	strong database homology
`O80792`	Arabidopsis thaliana	Putative DEAD-box ATP-dependent RNA helicase 33	56.511%	Swiss-Prot	strong database homology
`Q9FNM7`	Arabidopsis thaliana	DEAD-box ATP-dependent RNA helicase 26	57.438%	Swiss-Prot	moderate database homology
`Q9FFQ1`	Arabidopsis thaliana	DEAD-box ATP-dependent RNA helicase 31	56.000%	Swiss-Prot	moderate database homology
`Q6K7R9`	Oryza sativa subsp. japonica	DEAD-box ATP-dependent RNA helicase 48	62.543%	Swiss-Prot	strong database homology

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