Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1498 bp · LXL04_026449|LXL04_026449|OH1004|cDNA
AATGCACCTTTGCTGTCTCCCCTCATGTCCAGCTCATTAAATCTTGATGGGCTCTGGTGTCTCCATCTCAAACCTTGCTACAAAAACCCATTCACCATCCATTTTTCCTTCAAACTCTCCCTTTCTTTAATTTCCCAATTTTACTTTTAATTTCAAGAAAATGAGAGAAATTCTCCATGTACAAGCCGGACAATGCGGAAATCAGATCGGAGGGAAGTTTTGGGAGGTGGTGTGTGACGAGCACGGTATCGATGCCACCG...
1338 bp · LXL04_026449|LXL04_026449|OH1004|CDS
ATGAGAGAAATTCTCCATGTACAAGCCGGACAATGCGGAAATCAGATCGGAGGGAAGTTTTGGGAGGTGGTGTGTGACGAGCACGGTATCGATGCCACCGGGAAATATGTCGGTAACAGCCATGTCCAACTTGAAAGAGTGAATGTGTACTATAATGAGGCTAGCGGTGGTAGGTATGTACCTAGAGCTGTGTTGGTGGATCTTGAGCCTGGTACTATGGACAGTCTACGTACCGGACCCTATGGAAATATTTTTAGGCC...
Protein
Download Protein FASTA445 aa · LXL04_026449|LXL04_026449|OH1004|PROTEIN
MREILHVQAGQCGNQIGGKFWEVVCDEHGIDATGKYVGNSHVQLERVNVYYNEASGGRYVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026449 |
|---|---|
| TK1151 ID | TkA06G010610 |
| OH-1004 ID | LXL04_026449 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026449 |
|---|---|
| Location | Chr05:126424600-126426428 (+) |
| Description | Similar to TUBB1: Tubulin beta-1 chain |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000226 microtubule cytoskeleton organization Biological Process GO:0000278 mitotic cell cycle Biological Process GO:0007017 microtubule-based process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005874 microtubule Cellular Component GO:0003924 GTPase activity Molecular Function GO:0005200 structural constituent of cytoskeleton Molecular Function GO:0005525 GTP binding Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00091.32Tubulin3-211 aaPF03953.23Tubulin_C261-382 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026449 | PF00091.32 | Tubulin | 3 | 211 | 2.9e-65 | 220.9 |
| LXL04_026449 | PF03953.23 | Tubulin_C | 261 | 382 | 1.7e-40 | 138.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.