LXL04_026442 | RubberDandelionOmics

Gene overview

LXL04_026442

Reference: OH-1004 Chr: Chr05 Coordinates: 126373179-126377176 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1359 bp · LXL04_026442|LXL04_026442|OH1004|cDNA

ATGAAGGTCAAGGTTATATCTCGCTCTGCAGATGAATTTACACGCGAGCGGAGTAACGATCTTCAGAGGGTTTCTCGGAACTACGACCCAAACCTGCGTCCTCAAGAGAAGGCGGTGGAGTATGTTAGAGCCCTTAATGCAGCTAAATTGGATAAGGTATTTGCAAGACCATTTATTGGAGCCATGGATGGGCATATAGACGCCATTTCATGTATGGCAAAAAACCCTAGTCACTTGAAAGGTTTATTTTCTGGTTCCAT...

CDS

Download CDS FASTA

1359 bp · LXL04_026442|LXL04_026442|OH1004|CDS

ATGAAGGTCAAGGTTATATCTCGCTCTGCAGATGAATTTACACGCGAGCGGAGTAACGATCTTCAGAGGGTTTCTCGGAACTACGACCCAAACCTGCGTCCTCAAGAGAAGGCGGTGGAGTATGTTAGAGCCCTTAATGCAGCTAAATTGGATAAGGTATTTGCAAGACCATTTATTGGAGCCATGGATGGGCATATAGACGCCATTTCATGTATGGCAAAAAACCCTAGTCACTTGAAAGGTTTATTTTCTGGTTCCAT...

Protein

Download Protein FASTA

452 aa · LXL04_026442|LXL04_026442|OH1004|PROTEIN

MKVKVISRSADEFTRERSNDLQRVSRNYDPNLRPQEKAVEYVRALNAAKLDKVFARPFIGAMDGHIDAISCMAKNPSHLKGLFSGSMDGDIRLWDIASRKTICQYSGHQGAVRGLTVSTDGRILVSCGTDCTVRLWKVPLSSGIESSDSSDTSDKSIASYVWKNAFWGVDHQWEGNIFATAGAQVDIWDHNRSQPITSFEWGNDTVISVRFNPGEPNILATSGSDRSITIYDLRTSSPARKLIMRTKTNSIAWNPMEPMN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026442`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_026442`
Location	Chr05:126373179-126377176 (+)
Description	Similar to DCAF13: DDB1- and CUL4-associated factor 13
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026442` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0006364 rRNA processing Biological Process GO:0007056 spindle assembly involved in female meiosis Biological Process GO:0016567 protein ubiquitination Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0044725 epigenetic programming in the zygotic pronuclei Biological Process GO:0045995 regulation of embryonic development Biological Process GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component
KEGG gene cross-reference	gga:420263 hsa:25879 mmu:223499 xtr:407967 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.529

Rank 1 · LXL04_026442 · OH-1004

Cytoplasm0.378

Rank 2 · LXL04_026442 · OH-1004

Mitochondrion0.053

Rank 3 · LXL04_026442 · OH-1004

Cell membrane0.052

Rank 4 · LXL04_026442 · OH-1004

Lysosome / Vacuole0.035

Rank 5 · LXL04_026442 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25175.2Beta-prop_WDR559-138 aa

PF24807.2WD40_CDC20-Fz59-143 aa

PF23869.2Beta-prop_WDR75_1st59-97 aa

PF23381.2Beta-prop_IFT122_1st60-139 aa

PF00400.39WD4060-95 aa

PF24814.2WD40_Prp1961-310 aa

PF24105.2Beta-prop_CAF1B_HIR161-138 aa

PF25174.2Beta-prop_THOC362-142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026442	`PF25175.2`	Beta-prop_WDR5	59	138	4e-38	132.1
LXL04_026442	`PF24807.2`	WD40_CDC20-Fz	59	143	4.5e-32	112.2
LXL04_026442	`PF23869.2`	Beta-prop_WDR75_1st	59	97	2.1e-10	41.1
LXL04_026442	`PF23381.2`	Beta-prop_IFT122_1st	60	139	1.6e-38	133.4
LXL04_026442	`PF00400.39`	WD40	60	95	6.7e-36	121.9
LXL04_026442	`PF24814.2`	WD40_Prp19	61	310	2.5e-31	109.5
LXL04_026442	`PF24105.2`	Beta-prop_CAF1B_HIR1	61	138	1.5e-18	67.7
LXL04_026442	`PF25174.2`	Beta-prop_THOC3	62	142	9.6e-43	146.9
LXL04_026442	`PF25173.2`	Beta-prop_WDR3_1st	62	141	4.3e-36	125.1
LXL04_026442	`PF24796.2`	WDR55	62	138	8.1e-24	84.9
LXL04_026442	`PF23414.2`	Beta-prop_EML_2	63	149	8.2e-26	91.7
LXL04_026442	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	64	136	1.8e-13	51.3
LXL04_026442	`PF25172.2`	Beta-prop_WDR3_2nd	65	137	4.4e-23	82.6
LXL04_026442	`PF25047.1`	Beta-prop_TEP1_2nd	65	145	9.3e-17	61.7
LXL04_026442	`PF29630.1`	ASA1	65	139	2.4e-12	47.2
LXL04_026442	`PF24817.2`	WD40_WDHD1_1st	69	258	7.6e-24	85.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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