LXL04_026440 | RubberDandelionOmics

Gene overview

LXL04_026440

Reference: OH-1004 Chr: Chr05 Coordinates: 126354501-126357356 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1629 bp · LXL04_026440|LXL04_026440|OH1004|cDNA

ATGGGTTTTTTGAGATTTTGTTGGTTTATATCAACCATCATTGTTTTCTTCTCTAACCCTAACCCGGTGGCTGCCGGGGACATTGTTCATGACGACAAATTTGCTCCCAAGAAGCCTGGTTGTGAGAATGACTTTGTACTGGTGAAAGTTCAAACATGGGTTGATGGTATAGAAGGTGCTGAGTTTGTTGGCGTTGGTGCTAGATTTGGAACCACAATCGTATCCAAAGAGAAAAATGCAAACCGCACTAACCTAACTCA...

CDS

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1629 bp · LXL04_026440|LXL04_026440|OH1004|CDS

ATGGGTTTTTTGAGATTTTGTTGGTTTATATCAACCATCATTGTTTTCTTCTCTAACCCTAACCCGGTGGCTGCCGGGGACATTGTTCATGACGACAAATTTGCTCCCAAGAAGCCTGGTTGTGAGAATGACTTTGTACTGGTGAAAGTTCAAACATGGGTTGATGGTATAGAAGGTGCTGAGTTTGTTGGCGTTGGTGCTAGATTTGGAACCACAATCGTATCCAAAGAGAAAAATGCAAACCGCACTAACCTAACTCA...

Protein

Download Protein FASTA

542 aa · LXL04_026440|LXL04_026440|OH1004|PROTEIN

MGFLRFCWFISTIIVFFSNPNPVAAGDIVHDDKFAPKKPGCENDFVLVKVQTWVDGIEGAEFVGVGARFGTTIVSKEKNANRTNLTQSIPHDCCTPPKHKLTGDVIMVTRGHCKFTTKANIAQAAGASAVLIINNQRELYKMVCEPDETDLDIHIPTVMLPQDAGVELERLLSNRSSISVQLYSPRRPVVDIAEVFLWLMAVGTILCASYWSAWSANEAAIEHDKLLEDFSEELSNTKLIGTTNGGIVKVNTKSAVLFVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026440`
TK1151 ID	TkA06G010400
OH-1004 ID	LXL04_026440
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.958 / OH-1004 20.849 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026440

Location Chr05:126354501-126357356 (-)

Description Similar to SPPL2: Signal peptide peptidase-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63690`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release
`At1g01650`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0730900`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release
`Os02g0823000`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release
`Os11g0433200`	Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026440 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0033619 membrane protein proteolysis Biological Process

GO:0005765 lysosomal membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010008 endosome membrane Cellular Component

GO:0030660 Golgi-associated vesicle membrane Cellular Component

GO:0098553 lumenal side of endoplasmic reticulum membrane Cellular Component

GO:0098554 cytoplasmic side of endoplasmic reticulum membrane Cellular Component

GO:0042500 aspartic endopeptidase activity, intramembrane cleaving Molecular Function

KEGG gene cross-reference

ath:AT1G01650

ath:AT1G63690

dosa:Os02g0823000

dosa:Os06g0730900

dosa:Os11g0433200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.422

Rank 1 · LXL04_026440 · OH-1004

Cell membrane0.233

Rank 2 · LXL04_026440 · OH-1004

Cytoplasm0.188

Rank 3 · LXL04_026440 · OH-1004

Golgi apparatus0.188

Rank 4 · LXL04_026440 · OH-1004

Endoplasmic reticulum0.162

Rank 5 · LXL04_026440 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02225.28PA92-168 aa

PF04258.19Peptidase_A22B247-524 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026440	`PF02225.28`	PA	92	168	2e-13	51.0
LXL04_026440	`PF04258.19`	Peptidase_A22B	247	524	8.2e-104	348.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W469`	Arabidopsis thaliana	Signal peptide peptidase-like 2	78.558%	Swiss-Prot	strong database homology
`Q0WMJ8`	Arabidopsis thaliana	Signal peptide peptidase-like 4	69.844%	Swiss-Prot	strong database homology
`Q5Z413`	Oryza sativa subsp. japonica	Signal peptide peptidase-like 5	72.673%	Swiss-Prot	strong database homology
`Q0DWA9`	Oryza sativa subsp. japonica	Signal peptide peptidase-like 4	73.190%	Swiss-Prot	strong database homology
`Q53P98`	Oryza sativa subsp. japonica	Signal peptide peptidase-like 2	51.521%	Swiss-Prot	strong database homology

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