LXL04_026316 | RubberDandelionOmics

Gene overview

LXL04_026316

Reference: OH-1004 Chr: Chr05 Coordinates: 124822439-124825049 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1785 bp · LXL04_026316|LXL04_026316|OH1004|cDNA

ATGAAGAAACCCATCGCCGGTGGTGCCCCGACCCTTACCTCCACAGATGTCAATCCACACACCAATAATTATCTTTTATTCCAACAACAACAAGGCGACGAGAGTTTTTTCAAGCTCTCTTTGCCTTTAATGGTCTCATCATTTTGGTTACCTTTTCTGCTTTTCCTATCTACATTCGGCTTCAATCATGGCGACGAAGGGAATGTAGACGTACACAATCATAATCCATACACGAAAGAGCAAGATCAAAATCATCCAGA...

CDS

Download CDS FASTA

1785 bp · LXL04_026316|LXL04_026316|OH1004|CDS

ATGAAGAAACCCATCGCCGGTGGTGCCCCGACCCTTACCTCCACAGATGTCAATCCACACACCAATAATTATCTTTTATTCCAACAACAACAAGGCGACGAGAGTTTTTTCAAGCTCTCTTTGCCTTTAATGGTCTCATCATTTTGGTTACCTTTTCTGCTTTTCCTATCTACATTCGGCTTCAATCATGGCGACGAAGGGAATGTAGACGTACACAATCATAATCCATACACGAAAGAGCAAGATCAAAATCATCCAGA...

Protein

Download Protein FASTA

594 aa · LXL04_026316|LXL04_026316|OH1004|PROTEIN

MKKPIAGGAPTLTSTDVNPHTNNYLLFQQQQGDESFFKLSLPLMVSSFWLPFLLFLSTFGFNHGDEGNVDVHNHNPYTKEQDQNHPDTDRVLLEFNVSDSTAPSQDPHTSIDTETNQIQGTTQYEEQVTKVLGYSALVCEREIQDSYVEKKQEDIQTGKTHLTYLDLDEFRNTTQQDIGLNGAPSGLVNITHRLEPDGTKYNYASASKGAKVLAYNKEANGATNILGKDHDRYLRNPCSVSDKYVIIELSEETLVDAVKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026316`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026316

Location Chr05:124822439-124825049 (-)

Description Similar to SUN5: SUN domain-containing protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23950`	Encodes a member of the mid-SUN subfamily of SUN-domain proteins.	No verified direct reference in this release
`At1g71360`	Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER.	No verified direct reference in this release
`At1g22882`	Encodes a member of the mid-SUN subfamily of SUN-domain proteins that is localized to both the nuclear envelope and the ER.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026316 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000281 mitotic cytokinesis Biological Process

GO:0006997 nucleus organization Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0034975 protein folding in endoplasmic reticulum Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G22882

ath:AT1G71360

ath:AT4G23950

ddi:DDB_G0285925

spo:2540275

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.619

Rank 1 · LXL04_026316 · OH-1004

Golgi apparatus0.343

Rank 2 · LXL04_026316 · OH-1004

Nucleus0.089

Rank 3 · LXL04_026316 · OH-1004

Cytoplasm0.083

Rank 4 · LXL04_026316 · OH-1004

Cell membrane0.062

Rank 5 · LXL04_026316 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07738.20Sad1_UNC216-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026316	`PF07738.20`	Sad1_UNC	216	338	3e-28	99.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JPE9`	Arabidopsis thaliana	SUN domain-containing protein 5	41.434%	Swiss-Prot	moderate database homology
`F4I8I0`	Arabidopsis thaliana	SUN domain-containing protein 4	38.324%	Swiss-Prot	moderate database homology
`F4I316`	Arabidopsis thaliana	SUN domain-containing protein 3	41.497%	Swiss-Prot	moderate database homology

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