Gene Card
Gene overview
cDNA / CDS / Protein Sequences
534 bp · LXL04_026313|LXL04_026313|OH1004|cDNA
ATGGATCCTGAAATGGCAAAGAAGATTAAGGAAACGGTGCTGGACGTGTTGAAAAATTCAGACATGGAGTCTACGACCGAATTCCAGGTTCGGAAATTAGCATCCGAGAAGCTCGGAGAGGATTTATCGGTGCCTGAACGGAAGAAGCTCGTGCGGAGTGTCGTCCAGACGTACCTTGAGGAACAACAGGCAAAAGCAGAGGCTGATGAAAAGGTGACCGAAGCAGATGAACCAGAGGAAGaggtggaagaagaagaaga...
534 bp · LXL04_026313|LXL04_026313|OH1004|CDS
ATGGATCCTGAAATGGCAAAGAAGATTAAGGAAACGGTGCTGGACGTGTTGAAAAATTCAGACATGGAGTCTACGACCGAATTCCAGGTTCGGAAATTAGCATCCGAGAAGCTCGGAGAGGATTTATCGGTGCCTGAACGGAAGAAGCTCGTGCGGAGTGTCGTCCAGACGTACCTTGAGGAACAACAGGCAAAAGCAGAGGCTGATGAAAAGGTGACCGAAGCAGATGAACCAGAGGAAGAGGTGGAAGAAGAAGAAGA...
Protein
Download Protein FASTA177 aa · LXL04_026313|LXL04_026313|OH1004|PROTEIN
MDPEMAKKIKETVLDVLKNSDMESTTEFQVRKLASEKLGEDLSVPERKKLVRSVVQTYLEEQQAKAEADEKVTEADEPEEEVEEEEESEDDKKKKKGPKEYDDEGDLIVCRLSDKRRVTLTEFKGKSLVSIREYYKKDGKELPSSKGISLTSEQWSTFSKNVPGIEQAIKKMEARFN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026313 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026313 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:124808603-124809583 (-) | |||||||||
| Description | Similar to KELP: RNA polymerase II transcriptional coactivator KELP | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0009561 megagametogenesis Biological Process GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly Biological Process GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process GO:0005634 nucleus Cellular Component GO:0005667 transcription regulator complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0003690 double-stranded DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0003713 transcription coactivator activity Molecular Function GO:0046982 protein heterodimerization activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G10920 ath:AT5G09250 mcf:101926874 pon:100173565 spo:2542309 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08766.17DEK_C7-59 aaPF02229.23PC4110-160 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026313 | PF08766.17 | DEK_C | 7 | 59 | 3.1e-12 | 46.9 |
| LXL04_026313 | PF02229.23 | PC4 | 110 | 160 | 6.3e-23 | 80.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.