Gene Card
Gene overview
cDNA / CDS / Protein Sequences
591 bp · LXL04_026251|LXL04_026251|OH1004|cDNA
ATGGAATCCTCGCAGGCCACCGGCGCAGCAGCCTCCGGCGGTAACGGTACGCTTAATTCCCAAAACAACGACGCTTCACCTGCTGAATCAACAGTCTCGGCAACTACTTCGTCGTCGGACGATCCCAAGCAAAACCTAAACCAAGTCATCAATTCAATTCAAAAAACCCTAGGAACCATTCATCAGCTGTACCTCACTGTCTCCTCCTTCAACGTCTCATCCCAACTCCCGCTCCTCCAACGCCTAAATACACTTGTTAT...
591 bp · LXL04_026251|LXL04_026251|OH1004|CDS
ATGGAATCCTCGCAGGCCACCGGCGCAGCAGCCTCCGGCGGTAACGGTACGCTTAATTCCCAAAACAACGACGCTTCACCTGCTGAATCAACAGTCTCGGCAACTACTTCGTCGTCGGACGATCCCAAGCAAAACCTAAACCAAGTCATCAATTCAATTCAAAAAACCCTAGGAACCATTCATCAGCTGTACCTCACTGTCTCCTCCTTCAACGTCTCATCCCAACTCCCGCTCCTCCAACGCCTAAATACACTTGTTAT...
Protein
Download Protein FASTA196 aa · LXL04_026251|LXL04_026251|OH1004|PROTEIN
MESSQATGAAASGGNGTLNSQNNDASPAESTVSATTSSSDDPKQNLNQVINSIQKTLGTIHQLYLTVSSFNVSSQLPLLQRLNTLVMEMDNMAKLSEKCNIQVPMEVLNLTDDGKNPDEFTRDVLNSCIAKNQITKGKTDAFKGLRRHLLEELEQAFPDEVEDYREIRASSAAESMRLAQAQNMLPNGDVKIKPEM
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026251 |
|---|---|
| TK1151 ID | TkA06G018010 |
| OH-1004 ID | LXL04_026251 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026251 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:123800606-123802307 (-) | |||||||||
| Description | Similar to MED10B: Mediator of RNA polymerase II transcription subunit 10b | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0016567 protein ubiquitination Biological Process GO:0019827 stem cell population maintenance Biological Process GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | aag:5564532 ath:AT1G26665 ath:AT5G41910 mmu:28077 pon:100190825 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09748.15Med1052-165 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026251 | PF09748.15 | Med10 | 52 | 165 | 4.2e-34 | 117.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.