LXL04_026125 | RubberDandelionOmics

Gene overview

LXL04_026125

Reference: OH-1004 Chr: Chr05 Coordinates: 121271760-121273398 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

915 bp · LXL04_026125|LXL04_026125|OH1004|cDNA

atgagcgggaaaacGAAAATAAGAGTGATTATGGTGCTGACATAtgtaatTAGAATCAAAGAAGAAGAATTCAATTCGATGGAACAGCAATGGCAGGTTGAAACAACATCGAATAattcttcttcttgttcttcttcagTCGTATCGAATGATAATCGGAAAATTATCGCGAAACCATCGGCGTTGCCATCCAAATTTCTATGGACGAATGGGGAGATGGCGAGTGCAACCGCCGTCGTTTTGGGTTTCGCCGTTAGTCT...

CDS

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915 bp · LXL04_026125|LXL04_026125|OH1004|CDS

ATGAGCGGGAAAACGAAAATAAGAGTGATTATGGTGCTGACATATGTAATTAGAATCAAAGAAGAAGAATTCAATTCGATGGAACAGCAATGGCAGGTTGAAACAACATCGAATAATTCTTCTTCTTGTTCTTCTTCAGTCGTATCGAATGATAATCGGAAAATTATCGCGAAACCATCGGCGTTGCCATCCAAATTTCTATGGACGAATGGGGAGATGGCGAGTGCAACCGCCGTCGTTTTGGGTTTCGCCGTTAGTCT...

Protein

Download Protein FASTA

304 aa · LXL04_026125|LXL04_026125|OH1004|PROTEIN

MSGKTKIRVIMVLTYVIRIKEEEFNSMEQQWQVETTSNNSSSCSSSVVSNDNRKIIAKPSALPSKFLWTNGEMASATAVVLGFAVSLVGVYLSMPDSDYSFLKLPRTLEDLHVLRDNLESYTCDYTIQVLVGYCTVYIFMQTFMIPGTVFMSLLAGSLFGVIKGLALVVFAATAGASSCYFLSNLIGRPLILSLWPDKLVFFQNQVAKRESRLLNYMLFLRVTPTLPNAFINVASPLVNVPYHTFVLATSLGLLPVAFIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026125`
TK1151 ID	TkA06G027060
OH-1004 ID	LXL04_026125
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 91.447 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026125

Location Chr05:121271760-121273398 (-)

Description Similar to At4g09580: Uncharacterized membrane protein At4g09580

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g09580`	Uncharacterized membrane protein At4g09580.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026125 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0044233 mitochondria-associated endoplasmic reticulum membrane contact site Cellular Component

GO:0017128 phospholipid scramblase activity Molecular Function

KEGG gene cross-reference

ath:AT4G09580

ddi:DDB_G0275543

dme:Dmel_CG8408

gga:423047

xla:495477

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.367

Rank 1 · LXL04_026125 · OH-1004

Golgi apparatus0.249

Rank 2 · LXL04_026125 · OH-1004

Lysosome / Vacuole0.119

Rank 3 · LXL04_026125 · OH-1004

Cell membrane0.110

Rank 4 · LXL04_026125 · OH-1004

Nucleus0.092

Rank 5 · LXL04_026125 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09335.17VTT_dom145-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026125	`PF09335.17`	VTT_dom	145	264	9.5e-15	55.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L586`	Arabidopsis thaliana	Uncharacterized membrane protein At4g09580	51.282%	Swiss-Prot	strong database homology

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