LXL04_026069 | RubberDandelionOmics

Gene overview

LXL04_026069

Reference: OH-1004 Chr: Chr05 Coordinates: 120557589-120558370 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

561 bp · LXL04_026069|LXL04_026069|OH1004|cDNA

ATGAATGTCGACGAGCTACTCGAACAGCTACCGGCGGTACAAGAACTTCTCTATCGTCTCCTCGCTTGTCAGCCTGAAGGAGCAGCTTACAATAACCAACTCATACTACAAGCGTTCGCTCTAGTTCTCAAAGAAAGCTTGAAAATCTACTGTGTGATCATCGATGGCATAACCAGACTCGTTGAATTGTTCTTCGATTTGGGGAAAGACGACGCTATGGCAGCTATAGACATCTACAAGAGATCCGAGAAACAGACTGA...

CDS

Download CDS FASTA

561 bp · LXL04_026069|LXL04_026069|OH1004|CDS

ATGAATGTCGACGAGCTACTCGAACAGCTACCGGCGGTACAAGAACTTCTCTATCGTCTCCTCGCTTGTCAGCCTGAAGGAGCAGCTTACAATAACCAACTCATACTACAAGCGTTCGCTCTAGTTCTCAAAGAAAGCTTGAAAATCTACTGTGTGATCATCGATGGCATAACCAGACTCGTTGAATTGTTCTTCGATTTGGGGAAAGACGACGCTATGGCAGCTATAGACATCTACAAGAGATCCGAGAAACAGACTGA...

Protein

Download Protein FASTA

186 aa · LXL04_026069|LXL04_026069|OH1004|PROTEIN

MNVDELLEQLPAVQELLYRLLACQPEGAAYNNQLILQAFALVLKESLKIYCVIIDGITRLVELFFDLGKDDAMAAIDIYKRSEKQTEQLAEFYNLGKHLRLSMNIQFPILCQVFLIFVYQIILVNLYPIYNNMVQNFQPPPCFLATMEEYVKGISSNDSDSNTELVSQIDFLPINILIKNLRINSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026069`
TK1151 ID	TkA06G028950
OH-1004 ID	LXL04_026069
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026069

Location Chr05:120557589-120558370 (-)

Description Similar to At5g57200: Putative clathrin assembly protein At5g57200

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57200`	Putative clathrin assembly protein At5g57200.	No verified direct reference in this release
`At4g25940`	Putative clathrin assembly protein At4g25940.	No verified direct reference in this release
`At2g01600`	Putative clathrin assembly protein At2g01600.	No verified direct reference in this release
`At1g14910`	Putative clathrin assembly protein At1g14910.	No verified direct reference in this release
`At5g35200`	Putative clathrin assembly protein At5g35200.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026069 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006900 vesicle budding from membrane Biological Process

GO:0048268 clathrin coat assembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005905 clathrin-coated pit Cellular Component

GO:0009536 plastid Cellular Component

GO:0030136 clathrin-coated vesicle Cellular Component

KEGG gene cross-reference

ath:AT1G14910

ath:AT2G01600

ath:AT4G25940

ath:AT5G35200

ath:AT5G57200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.571

Rank 1 · LXL04_026069 · OH-1004

Nucleus0.446

Rank 2 · LXL04_026069 · OH-1004

Cell membrane0.066

Rank 3 · LXL04_026069 · OH-1004

Golgi apparatus0.053

Rank 4 · LXL04_026069 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_026069 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07651.23ANTH1-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026069	`PF07651.23`	ANTH	1	110	4.2e-30	105.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVD8`	Arabidopsis thaliana	Putative clathrin assembly protein At5g57200	53.020%	Swiss-Prot	strong database homology
`Q8VYT2`	Arabidopsis thaliana	Putative clathrin assembly protein At4g25940	51.678%	Swiss-Prot	strong database homology
`Q8LBH2`	Arabidopsis thaliana	Putative clathrin assembly protein At2g01600	44.737%	Swiss-Prot	moderate database homology
`P94017`	Arabidopsis thaliana	Putative clathrin assembly protein At1g14910	42.763%	Swiss-Prot	moderate database homology
`Q9LHS0`	Arabidopsis thaliana	Putative clathrin assembly protein At5g35200	40.132%	Swiss-Prot	moderate database homology

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