LXL04_026011 | RubberDandelionOmics

Gene overview

LXL04_026011

Reference: OH-1004 Chr: Chr05 Coordinates: 119737461-119738902 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1287 bp · LXL04_026011|LXL04_026011|OH1004|cDNA

ATGCTTTTAAATATTCGTTTTCCATGCACCAATAAATGCCACTTGTTGATTCTTTTGTTTCAACCCTCCCCTACTCCCATATACAAAATCTCTTCTCAGGTTCTCCCTCTCTATCGATCTCCACGATTACACCGTATCTCACAAATGGAGAAATCTCGAGTTACGGAAATCCAAGTTCGAATCGACTGTAATGGGTGCGTTCAGAAGATTAAGAAGGCTCTGAATGGCATCAAGGGCATACAGGATATCTATATCGACAT...

CDS

Download CDS FASTA

1287 bp · LXL04_026011|LXL04_026011|OH1004|CDS

ATGCTTTTAAATATTCGTTTTCCATGCACCAATAAATGCCACTTGTTGATTCTTTTGTTTCAACCCTCCCCTACTCCCATATACAAAATCTCTTCTCAGGTTCTCCCTCTCTATCGATCTCCACGATTACACCGTATCTCACAAATGGAGAAATCTCGAGTTACGGAAATCCAAGTTCGAATCGACTGTAATGGGTGCGTTCAGAAGATTAAGAAGGCTCTGAATGGCATCAAGGGCATACAGGATATCTATATCGACAT...

Protein

Download Protein FASTA

428 aa · LXL04_026011|LXL04_026011|OH1004|PROTEIN

MLLNIRFPCTNKCHLLILLFQPSPTPIYKISSQVLPLYRSPRLHRISQMEKSRVTEIQVRIDCNGCVQKIKKALNGIKGIQDIYIDIPQQKLTVIGWADPEKIVKALKKTRKAATICSESEPPPPPPTEPPSKDGAPPPDPASNPPPAEPVPPPEPVEPPKEPENLHPEPTTEPPHSPPPPPAPAAQEPPSTDPTPLEAEEVHVVHHYPPNHGHRRDRVSNASVKHYSSPVYKNEPPQPIQVNHRYSTYKPTPYVTEYKH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026011`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026011

Location Chr05:119737461-119738902 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g08570`	Heavy-metal-binding protein.	No verified direct reference in this release
`At1g06330`	Heavy-metal-binding protein.	No verified direct reference in this release
`At3g56891`	Heavy-metal-binding protein.	No verified direct reference in this release
`At4g35060`	Heavy-metal-binding protein.	No verified direct reference in this release
`At4g39700`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026011 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G56891

ath:AT4G08570

ath:AT4G35060

ath:AT4G39700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.486

Rank 1 · LXL04_026011 · OH-1004

Cytoplasm0.347

Rank 2 · LXL04_026011 · OH-1004

Nucleus0.323

Rank 3 · LXL04_026011 · OH-1004

Endoplasmic reticulum0.055

Rank 4 · LXL04_026011 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_026011 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403.33HMA59-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_026011	`PF00403.33`	HMA	59	110	3.6e-12	47.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O81464`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 24	49.057%	Swiss-Prot	weak database homology
`F4IC29`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 28	33.010%	Swiss-Prot	weak database homology
`B3H6D0`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 45	36.066%	Swiss-Prot	weak database homology
`O49613`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 25	39.683%	Swiss-Prot	weak database homology
`O65657`	Arabidopsis thaliana	Heavy metal-associated isoprenylated plant protein 23	48.000%	Swiss-Prot	weak database homology

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