LXL04_025955 | RubberDandelionOmics

Gene overview

LXL04_025955

Reference: OH-1004 Chr: Chr05 Coordinates: 118976522-118978856 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1002 bp · LXL04_025955|LXL04_025955|OH1004|cDNA

ATGGTGGCGGAAGATGGAGGAGAGGAGGGCAGCAGTAAGGGATCAAAAACCAGGAAATCCGAAATGGGGACGATGCGGTCCTACTGGCTGACTAATTTCCCGAGGGATCTGATGGCAGGAGCGATGATGGGTGGAATGGTGCACACGGTTGTAGCTCCAATTGAGAGGGCGAAGCTTCTGTTGCAAACTCAAGAAAGCAACATCGCCATTGTTGGAGGGAAGCACAGGAGGTTTAATGGTATGATTGATTGCATTGTCCA...

CDS

Download CDS FASTA

1002 bp · LXL04_025955|LXL04_025955|OH1004|CDS

ATGGTGGCGGAAGATGGAGGAGAGGAGGGCAGCAGTAAGGGATCAAAAACCAGGAAATCCGAAATGGGGACGATGCGGTCCTACTGGCTGACTAATTTCCCGAGGGATCTGATGGCAGGAGCGATGATGGGTGGAATGGTGCACACGGTTGTAGCTCCAATTGAGAGGGCGAAGCTTCTGTTGCAAACTCAAGAAAGCAACATCGCCATTGTTGGAGGGAAGCACAGGAGGTTTAATGGTATGATTGATTGCATTGTCCA...

Protein

Download Protein FASTA

333 aa · LXL04_025955|LXL04_025955|OH1004|PROTEIN

MVAEDGGEEGSSKGSKTRKSEMGTMRSYWLTNFPRDLMAGAMMGGMVHTVVAPIERAKLLLQTQESNIAIVGGKHRRFNGMIDCIVHTVKNEGVLSLWRGNGSSVLRYYPSVALNFSLKDLYRSILRNNNNQQLTFLSGPSSNFIAGAAAGCTTLLIIYPLDIAHTRLAADLGRTGSRQFHGIRHFLTTVYATDGARGIYKGLPASLQGMVVHRGLYFGGFDTIKEKLSEGAPSEAALWKRWIAAQAVTTSAGLVSYPMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025955`
TK1151 ID	TkA06G037770
OH-1004 ID	LXL04_025955
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025955

Location Chr05:118976522-118978856 (-)

Description Similar to At5g56450: Probable ADP,ATP carrier protein At5g56450

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56450`	ADP:ATP antiporter that catalyzes the exchange of ADP and ATP across the membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025955 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001508 action potential Biological Process

GO:0006839 mitochondrial transport Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0008340 determination of adult lifespan Biological Process

GO:0010507 negative regulation of autophagy Biological Process

GO:0015866 ADP transport Biological Process

GO:0015867 ATP transport Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0040011 locomotion Biological Process

GO:0046716 muscle cell cellular homeostasis Biological Process

GO:0046902 regulation of mitochondrial membrane permeability Biological Process

KEGG gene cross-reference

ath:AT5G56450

bta:282479

ddi:DDB_G0267454

dme:Dmel_CG16944

mmu:11740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.886

Rank 1 · LXL04_025955 · OH-1004

Cytoplasm0.032

Rank 2 · LXL04_025955 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_025955 · OH-1004

Nucleus0.022

Rank 4 · LXL04_025955 · OH-1004

Peroxisome0.017

Rank 5 · LXL04_025955 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153.33Mito_carr32-129 aa

PF00153.33Mito_carr140-229 aa

PF00153.33Mito_carr237-324 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025955	`PF00153.33`	Mito_carr	32	129	1.7e-66	220.7
LXL04_025955	`PF00153.33`	Mito_carr	140	229	1.7e-66	220.7
LXL04_025955	`PF00153.33`	Mito_carr	237	324	1.7e-66	220.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FM86`	Arabidopsis thaliana	ADP/ATP translocase At5g56450	68.308%	Swiss-Prot	strong database homology

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