LXL04_025920 | RubberDandelionOmics

Gene overview

LXL04_025920

Reference: OH-1004 Chr: Chr05 Coordinates: 118569177-118571996 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1224 bp · LXL04_025920|LXL04_025920|OH1004|cDNA

ATGGGTTGCTCACTCCTTTCTCAGTTCCTAAATCTCTCCAGCACTTGTCCGCGCTTCACGTCATCTAGCACTTCAAGTAAATTACTACGAAGACTACATCTGTTCCCTGATAATCACCTTCCAATTAGTCAAAGATGCTATTGCAGTGTTTCAACCCCTGAACCTATTACTTCAGAGACTCCCTCCACCTCTATAAAAAAAAGAATTGTGTCTGGAGTCCAACCAACAGGATCTATACACCTTGGGAATTATCTTGGTGC...

CDS

Download CDS FASTA

1224 bp · LXL04_025920|LXL04_025920|OH1004|CDS

ATGGGTTGCTCACTCCTTTCTCAGTTCCTAAATCTCTCCAGCACTTGTCCGCGCTTCACGTCATCTAGCACTTCAAGTAAATTACTACGAAGACTACATCTGTTCCCTGATAATCACCTTCCAATTAGTCAAAGATGCTATTGCAGTGTTTCAACCCCTGAACCTATTACTTCAGAGACTCCCTCCACCTCTATAAAAAAAAGAATTGTGTCTGGAGTCCAACCAACAGGATCTATACACCTTGGGAATTATCTTGGTGC...

Protein

Download Protein FASTA

407 aa · LXL04_025920|LXL04_025920|OH1004|PROTEIN

MGCSLLSQFLNLSSTCPRFTSSSTSSKLLRRLHLFPDNHLPISQRCYCSVSTPEPITSETPSTSIKKRIVSGVQPTGSIHLGNYLGAIKNWVSLQDKYETLFFIVDLHAITLPYDVQQLSKATKDTAALYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRELAERVNHLYGGRKWKKLGGRGGSIFKVPEPLIPPTGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025920`
TK1151 ID	TkA06G036000
OH-1004 ID	LXL04_025920
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025920

Location Chr05:118569177-118571996 (-)

Description Similar to OVA4: Tryptophan--tRNA ligase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25840`	Tryptophan--tRNA ligase, chloroplastic/mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025920 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006436 tryptophanyl-tRNA aminoacylation Biological Process

GO:0048481 plant ovule development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004830 tryptophan-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ana:all1269

ath:AT2G25840

pma:Pro_1063

pmt:PMT_0422

tel:tlr1996

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.693

Rank 1 · LXL04_025920 · OH-1004

Plastid0.365

Rank 2 · LXL04_025920 · OH-1004

Cytoplasm0.044

Rank 3 · LXL04_025920 · OH-1004

Nucleus0.034

Rank 4 · LXL04_025920 · OH-1004

Peroxisome0.010

Rank 5 · LXL04_025920 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00579.32tRNA-synt_1b68-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025920	`PF00579.32`	tRNA-synt_1b	68	359	6.4e-80	269.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RXE9`	Arabidopsis thaliana	Tryptophan--tRNA ligase, chloroplastic/mitochondrial	70.025%	Swiss-Prot	strong database homology

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