LXL04_025914 | RubberDandelionOmics

Gene overview

LXL04_025914

Reference: OH-1004 Chr: Chr05 Coordinates: 118522672-118526071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · LXL04_025914|LXL04_025914|OH1004|cDNA

ATGCCGCAGTACAGAGACGTTGAGAAAGCGGATAAGAAAGGGACTGAACATTTAGCGGAGCCCTTCATCGCCGATAATAAAAAAAACGTTCATCGTTCTAAAGAACCCGATCAAAATGCCTCAATCGTTATGGTCCTTTTAAGCACCGCCGTTGCGGTCTGTGGGTCTCTCGAATTCGGAACGTGTGTGGGGTATACGGCTCCTACTCAAGCGGCTCTCAGCATTGATTTGAATTTATCGGTTGCTGAGTATGCCCTCTT...

CDS

Download CDS FASTA

1446 bp · LXL04_025914|LXL04_025914|OH1004|CDS

ATGCCGCAGTACAGAGACGTTGAGAAAGCGGATAAGAAAGGGACTGAACATTTAGCGGAGCCCTTCATCGCCGATAATAAAAAAAACGTTCATCGTTCTAAAGAACCCGATCAAAATGCCTCAATCGTTATGGTCCTTTTAAGCACCGCCGTTGCGGTCTGTGGGTCTCTCGAATTCGGAACGTGTGTGGGGTATACGGCTCCTACTCAAGCGGCTCTCAGCATTGATTTGAATTTATCGGTTGCTGAGTATGCCCTCTT...

Protein

Download Protein FASTA

481 aa · LXL04_025914|LXL04_025914|OH1004|PROTEIN

MPQYRDVEKADKKGTEHLAEPFIADNKKNVHRSKEPDQNASIVMVLLSTAVAVCGSLEFGTCVGYTAPTQAALSIDLNLSVAEYALFGSIVTISAMIGAVTSGGIADTYGRKGAMALSSVFCIAGWLAIYLAMGAVSLDLGRFFTGFGIGIFSYVVPIYIAEISPKELRGSLTTLNQLMIVTGSSISFLVGTVVTWRNLALVGVVPPVLMITGLLFIPESPRWLAKVGREAEFKSSLRQLRGAKANISAEAEEIHETIVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025914`
TK1151 ID	TkA06G035880
OH-1004 ID	LXL04_025914
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.300
Protein coverage (%)	TK1151 100.000 / OH-1004 56.549 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025914

Location Chr05:118522672-118526071 (+)

Description Similar to At5g18840: Sugar transporter ERD6-like 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18840`	Sugar transporter.	No verified direct reference in this release
`At2g48020`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release
`At3g05150`	Sugar transporter.	No verified direct reference in this release
`At1g08920`	Sugar transporter.	Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides.2010 · DOI: 10.1074/jbc.m109.054288

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025914 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G08920

ath:AT1G54730

ath:AT2G48020

ath:AT3G05150

ath:AT5G18840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.496

Rank 1 · LXL04_025914 · OH-1004

Lysosome / Vacuole0.228

Rank 2 · LXL04_025914 · OH-1004

Cytoplasm0.125

Rank 3 · LXL04_025914 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_025914 · OH-1004

Golgi apparatus0.064

Rank 5 · LXL04_025914 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_164-426 aa

PF00083.31Sugar_tr80-477 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025914	`PF07690.22`	MFS_1	64	426	2.8e-19	70.0
LXL04_025914	`PF00083.31`	Sugar_tr	80	477	2.8e-87	294.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LBI9`	Arabidopsis thaliana	Sugar transporter ERD6-like 16	59.499%	Swiss-Prot	strong database homology
`P93051`	Arabidopsis thaliana	Sugar transporter ERD6-like 7	56.624%	Swiss-Prot	strong database homology
`Q3ECP7`	Arabidopsis thaliana	Sugar transporter ERD6-like 5	53.348%	Swiss-Prot	strong database homology
`Q0WQ63`	Arabidopsis thaliana	Sugar transporter ERD6-like 8	53.376%	Swiss-Prot	strong database homology
`Q94KE0`	Arabidopsis thaliana	Sugar transporter ESL1	45.610%	Swiss-Prot	moderate database homology

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