LXL04_025878 | RubberDandelionOmics

Gene overview

LXL04_025878

Reference: OH-1004 Chr: Chr05 Coordinates: 118061229-118066922 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2979 bp · LXL04_025878|LXL04_025878|OH1004|cDNA

ATGAGGATTGAAGACGGCGTGGAAGAATTATCAGCTTCCCGGAATCATCTCGTATTCGCTTATTATGTTACAGGCCATGGATTCGGCCATGCCACACGAGTTGTCGAGGTTGTTCGCCACCTCATTCTCGCCGGCCATGATGTTCACGTGGTGACCGGTGCACCGGACTTCGTCTTCACTACCGAAGTCCAATCTCCAAGACTTTTCCTTCGGAAGCTTGTTTTGGACTGTGGAGCTGTTCAAGCAGATGCTTTAACAGT...

CDS

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2979 bp · LXL04_025878|LXL04_025878|OH1004|CDS

ATGAGGATTGAAGACGGCGTGGAAGAATTATCAGCTTCCCGGAATCATCTCGTATTCGCTTATTATGTTACAGGCCATGGATTCGGCCATGCCACACGAGTTGTCGAGGTTGTTCGCCACCTCATTCTCGCCGGCCATGATGTTCACGTGGTGACCGGTGCACCGGACTTCGTCTTCACTACCGAAGTCCAATCTCCAAGACTTTTCCTTCGGAAGCTTGTTTTGGACTGTGGAGCTGTTCAAGCAGATGCTTTAACAGT...

Protein

Download Protein FASTA

992 aa · LXL04_025878|LXL04_025878|OH1004|PROTEIN

MRIEDGVEELSASRNHLVFAYYVTGHGFGHATRVVEVVRHLILAGHDVHVVTGAPDFVFTTEVQSPRLFLRKLVLDCGAVQADALTVDRLASLEKYNETAVAPRASILATEVEWLNSIKADLVVSDVVAVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKTRKEVRSEMGISEDVKLVILNFGGQPAGWKLKEDYLPPGWLCLVCGASSEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025878`
TK1151 ID	TkA06G033310
OH-1004 ID	LXL04_025878
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025878

Location Chr05:118061229-118066922 (+)

Description Similar to ARA1: L-arabinokinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16130`	Arabinose kinase.	The arabinose kinase, ARA1, gene of Arabidopsis is a novel member of the galactose kinase gene family.1999 · DOI: 10.1023/a:1006181908753

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025878 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006012 galactose metabolic process Biological Process

GO:0019566 arabinose metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004335 galactokinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009702 L-arabinokinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G16130

chl:Chy400_4000

rca:Rcas_0998

rrs:RoseRS_3819

vch:VC_1595

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.401

Rank 1 · LXL04_025878 · OH-1004

Mitochondrion0.217

Rank 2 · LXL04_025878 · OH-1004

Peroxisome0.212

Rank 3 · LXL04_025878 · OH-1004

Nucleus0.173

Rank 4 · LXL04_025878 · OH-1004

Plastid0.108

Rank 5 · LXL04_025878 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10509.16GalKase_gal_bdg496-537 aa

PF00288.33GHMP_kinases_N614-702 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025878	`PF10509.16`	GalKase_gal_bdg	496	537	2e-07	31.1
LXL04_025878	`PF00288.33`	GHMP_kinases_N	614	702	3e-17	63.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23461`	Arabidopsis thaliana	L-arabinokinase	79.676%	Swiss-Prot	strong database homology

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