LXL04_025839 | RubberDandelionOmics

Gene overview

LXL04_025839

Reference: OH-1004 Chr: Chr05 Coordinates: 117496150-117498166 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · LXL04_025839|LXL04_025839|OH1004|cDNA

ATGGGGCTAACATTCACCAAACTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATATTGATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTTTATACAAGCTCAAGCTCGGTGAGATTGTCACCACCATTCCCACCATAGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATTCGTCCACTATGGAGGCATTATTTCCAGAACACACAAGG...

CDS

Download CDS FASTA

546 bp · LXL04_025839|LXL04_025839|OH1004|CDS

ATGGGGCTAACATTCACCAAACTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATATTGATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTTTATACAAGCTCAAGCTCGGTGAGATTGTCACCACCATTCCCACCATAGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATTCGTCCACTATGGAGGCATTATTTCCAGAACACACAAGG...

Protein

Download Protein FASTA

181 aa · LXL04_025839|LXL04_025839|OH1004|PROTEIN

MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025839`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025839

Location Chr05:117496150-117498166 (-)

Description Similar to ARF: ADP-ribosylation factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70490`	GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.	No verified direct reference in this release
`At1g23490`	GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0489600`	GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.	No verified direct reference in this release
`Os01g0813400`	GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025839 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003924 GTPase activity Molecular Function

GO:0003925 G protein activity Molecular Function

KEGG gene cross-reference

ath:AT1G23490

ath:AT1G70490

dosa:Os01g0813400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.488

Rank 1 · LXL04_025839 · OH-1004

Cytoplasm0.381

Rank 2 · LXL04_025839 · OH-1004

Endoplasmic reticulum0.195

Rank 3 · LXL04_025839 · OH-1004

Cell membrane0.153

Rank 4 · LXL04_025839 · OH-1004

Lysosome / Vacuole0.136

Rank 5 · LXL04_025839 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025.28Arf5-177 aa

PF09439.17SRPRB16-143 aa

PF08477.20Roc19-129 aa

PF00071.29Ras19-173 aa

PF04670.19Gtr1_RagA19-141 aa

PF00503.27G-alpha45-111 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025839	`PF00025.28`	Arf	5	177	1.2e-81	273.0
LXL04_025839	`PF09439.17`	SRPRB	16	143	4.5e-13	49.7
LXL04_025839	`PF08477.20`	Roc	19	129	7.1e-14	52.8
LXL04_025839	`PF00071.29`	Ras	19	173	5.3e-12	46.3
LXL04_025839	`PF04670.19`	Gtr1_RagA	19	141	1.6e-09	38.3
LXL04_025839	`PF00503.27`	G-alpha	45	111	2.3e-13	50.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0DH91`	Arabidopsis thaliana	ADP-ribosylation factor 2-B	98.343%	Swiss-Prot	strong database homology
`Q9LQC8`	Arabidopsis thaliana	ADP-ribosylation factor 2-A	98.343%	Swiss-Prot	strong database homology
`P51823`	Oryza sativa subsp. japonica	ADP-ribosylation factor 2	99.448%	Swiss-Prot	strong database homology
`Q06396`	Oryza sativa subsp. japonica	ADP-ribosylation factor 1	98.895%	Swiss-Prot	strong database homology

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