LXL04_025773 | RubberDandelionOmics

Gene overview

LXL04_025773

Reference: OH-1004 Chr: Chr05 Coordinates: 116802206-116808696 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3234 bp · LXL04_025773|LXL04_025773|OH1004|cDNA

TCATGGTACAACAAGTCATTGattttttctatatatatattgctaAATCCCACATATAGTCTCCTCACAAAAAACCACGTACTTTCTTCGAGAAACATGTATACATCCCCACCACCTACCTCCTCTTTCCGGCGACCGCCGGCGATCTCAGCCACAGGCAAAACTGCCATCACCATCCCCGGCAAAAACCCAGTGTGGGTTCAGGCTGGTTCGAAGTCAAACCTCAGGAACCAAACCCGTAGGGTGCGACGGTCAACGAT...

CDS

Download CDS FASTA

3216 bp · LXL04_025773|LXL04_025773|OH1004|CDS

TTGATTTTTTCTATATATATATTGCTAAATCCCACATATAGTCTCCTCACAAAAAACCACGTACTTTCTTCGAGAAACATGTATACATCCCCACCACCTACCTCCTCTTTCCGGCGACCGCCGGCGATCTCAGCCACAGGCAAAACTGCCATCACCATCCCCGGCAAAAACCCAGTGTGGGTTCAGGCTGGTTCGAAGTCAAACCTCAGGAACCAAACCCGTAGGGTGCGACGGTCAACGATCATGGCAGTGGTGAGCAA...

Protein

Download Protein FASTA

1071 aa · LXL04_025773|LXL04_025773|OH1004|PROTEIN

MIFSIYILLNPTYSLLTKNHVLSSRNMYTSPPPTSSFRRPPAISATGKTAITIPGKNPVWVQAGSKSNLRNQTRRVRRSTIMAVVSKEESKSSTVTTENTTAINGASGMIDLKATITIKKHMKEKVMEKIEDQWESFMIGIGQGVLIQLVSEEIDPEIKSGKYVESIARSWSQRASSHPHVVEFTSNLTVPATFGRPGAVLITNFLRKEFYLVDIVIHGFNQGPVIFPAHSWIHSQHSNPDSRIIFKNQAYLPSQTPPGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025773`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025773

Location Chr05:116802206-116808696 (+)

Description Similar to LOX6: Lipoxygenase 6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67560`	Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	No verified direct reference in this release
`At1g72520`	Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	No verified direct reference in this release
`At1g17420`	13S-lipoxygenase that can use linolenic acid as substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025773 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009555 pollen development Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009625 response to insect Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009901 anther dehiscence Biological Process

KEGG gene cross-reference

ath:AT1G17420

ath:AT1G67560

ath:AT1G72520

sot:102597498

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.732

Rank 1 · LXL04_025773 · OH-1004

Cytoplasm0.095

Rank 2 · LXL04_025773 · OH-1004

Endoplasmic reticulum0.080

Rank 3 · LXL04_025773 · OH-1004

Cell membrane0.079

Rank 4 · LXL04_025773 · OH-1004

Mitochondrion0.059

Rank 5 · LXL04_025773 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01477.29PLAT186-246 aa

PF00305.25Lipoxygenase259-924 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025773	`PF01477.29`	PLAT	186	246	1e-05	26.9
LXL04_025773	`PF00305.25`	Lipoxygenase	259	924		1014.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9CAG3`	Arabidopsis thaliana	Lipoxygenase 6, chloroplastic	59.753%	Swiss-Prot	strong database homology
`Q9FNX8`	Arabidopsis thaliana	Lipoxygenase 4, chloroplastic	53.908%	Swiss-Prot	strong database homology
`Q9LNR3`	Arabidopsis thaliana	Lipoxygenase 3, chloroplastic	52.650%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card