LXL04_025766 | RubberDandelionOmics

Gene overview

LXL04_025766

Reference: OH-1004 Chr: Chr05 Coordinates: 116732755-116734428 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1674 bp · LXL04_025766|LXL04_025766|OH1004|cDNA

ATGTTCACCAACTTTGTCCTTTTCACGCTACTAACTTTAACTCCGACAACAACCATACTCGTAACCCCGCAAAATACCTCTGGCATCAGCGGCGAATGGAATCTCCTACACGACAACCTCGGCATATCTCCCATGCACATGCAGCTGCTACACAACGACAAGATTGTCATGTTTGACAGGActgatttcggtccttcaaacATAACTCTACCTTTTAACAGGTGTCGATACGATCCGTTCGACCCCGTGTTACAACAGGA...

CDS

Download CDS FASTA

1674 bp · LXL04_025766|LXL04_025766|OH1004|CDS

ATGTTCACCAACTTTGTCCTTTTCACGCTACTAACTTTAACTCCGACAACAACCATACTCGTAACCCCGCAAAATACCTCTGGCATCAGCGGCGAATGGAATCTCCTACACGACAACCTCGGCATATCTCCCATGCACATGCAGCTGCTACACAACGACAAGATTGTCATGTTTGACAGGACTGATTTCGGTCCTTCAAACATAACTCTACCTTTTAACAGGTGTCGATACGATCCGTTCGACCCCGTGTTACAACAGGA...

Protein

Download Protein FASTA

557 aa · LXL04_025766|LXL04_025766|OH1004|PROTEIN

MFTNFVLFTLLTLTPTTTILVTPQNTSGISGEWNLLHDNLGISPMHMQLLHNDKIVMFDRTDFGPSNITLPFNRCRYDPFDPVLQQDCTAHSILYDIQTNTLRPLSIETDTWCSSGAVLPDGTLVQTGGYNDGDHTVRTMVPCDDDLCDWVEFHGYLSERRLYSTDQILPDGRVIIIGGRQQSNYEFYPSTSSDYWIPPLNLSSFWLDFFKTDEVISENNLYPFVHLLPDGNLFIFANIRSVVFDYNRNHVVKRLPSIPG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025766`
TK1151 ID	TkA03G120170
OH-1004 ID	LXL04_025766
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 46.140 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025766

Location Chr05:116732755-116734428 (+)

Description Similar to GLOX: Aldehyde oxidase GLOX

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67290`	Catalyzes the oxidation of aldehydes to the corresponding carboxylate by coupling the reaction to the reduction of dioxygen to hydrogen peroxide.	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.110.082651

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025766 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0050665 hydrogen peroxide biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004031 aldehyde oxidase activity Molecular Function

KEGG gene cross-reference

abe:ARB_07867

ag:AAA33747

ath:AT1G67290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.374

Rank 1 · LXL04_025766 · OH-1004

Lysosome / Vacuole0.162

Rank 2 · LXL04_025766 · OH-1004

Cytoplasm0.154

Rank 3 · LXL04_025766 · OH-1004

Endoplasmic reticulum0.140

Rank 4 · LXL04_025766 · OH-1004

Nucleus0.070

Rank 5 · LXL04_025766 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07250.18Glyoxal_oxid_N45-439 aa

PF09118.18GO-like_E_set448-556 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025766	`PF07250.18`	Glyoxal_oxid_N	45	439	1.6e-173	577.6
LXL04_025766	`PF09118.18`	GO-like_E_set	448	556	4.7e-23	82.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG4`	Arabidopsis thaliana	Aldehyde oxidase GLOX1	42.115%	Swiss-Prot	moderate database homology

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