LXL04_025744 | RubberDandelionOmics

Gene overview

LXL04_025744

Reference: OH-1004 Chr: Chr05 Coordinates: 116260353-116262399 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

987 bp · LXL04_025744|LXL04_025744|OH1004|cDNA

ATGTCCGTTGTGTATCGATCACAAGCCATGTATGGAGCATACTTTAATAACACGTTCACCAATGTACTTGTGTACTACATTTTCTTGTTACTTTTGCTTCTCATTTCACCTTTTCTTTTCATTTGGGAGCTAATCACCAACCTCCGATCATGTTTCCAACCTATCGAAAACATGTCCGGGAAAGTAGTTCTGATCACCGGTGCTTCATCAGGAATTGGAGAGCTAATGGCTTATGAATATGCAAAAAGAGGTGCGTGTTT...

CDS

Download CDS FASTA

987 bp · LXL04_025744|LXL04_025744|OH1004|CDS

ATGTCCGTTGTGTATCGATCACAAGCCATGTATGGAGCATACTTTAATAACACGTTCACCAATGTACTTGTGTACTACATTTTCTTGTTACTTTTGCTTCTCATTTCACCTTTTCTTTTCATTTGGGAGCTAATCACCAACCTCCGATCATGTTTCCAACCTATCGAAAACATGTCCGGGAAAGTAGTTCTGATCACCGGTGCTTCATCAGGAATTGGAGAGCTAATGGCTTATGAATATGCAAAAAGAGGTGCGTGTTT...

Protein

Download Protein FASTA

328 aa · LXL04_025744|LXL04_025744|OH1004|PROTEIN

MSVVYRSQAMYGAYFNNTFTNVLVYYIFLLLLLLISPFLFIWELITNLRSCFQPIENMSGKVVLITGASSGIGELMAYEYAKRGACLVIVAIKEPESRLEQVAERARELGSPNVLFLFADVSKVDECRIFMDETIRHYGRLDHLVCNAGIASLYSIKTDVTKFAPVMDVNFWGSVYSTHFAIPHLMRTGGKIVVNASSAGVLHPPKGGFYNVSKSALISFYESLRFEVSPTITITILTLGYIETNLITAKSLTNGIGVGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025744`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_025744

Location Chr05:116260353-116262399 (-)

Description Similar to HSD1: 11-beta-hydroxysteroid dehydrogenase 1B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50700`	Catalyzes 11-beta, 17-beta-hydroxysteroid and reduces 17- beta-ketosteroids.	Regulation of HSD1 in seeds of Arabidopsis thaliana.2009 · DOI: 10.1093/pcp/pcp092
`At5g50600`	Catalyzes 11-beta, 17-beta-hydroxysteroid and reduces 17- beta-ketosteroids.	At5g50600 encodes a member of the short-chain dehydrogenase reductase superfamily with 11beta- and 17beta-hydroxysteroid dehydrogenase activities associated with Arabidopsis thaliana seed oil bodies.2007 · DOI: 10.1016/j.biochi.2006.09.013 A putative hydroxysteroid dehydrogenase involved in regulating plant growth and development.2007 · DOI: 10.1104/pp.107.100560 Regulation of HSD1 in seeds of Arabidopsis thaliana.2009 · DOI: 10.1093/pcp/pcp092
`At5g50690`	11-beta-hydroxysteroid dehydrogenase-like 4B.	No verified direct reference in this release
`At5g50590`	11-beta-hydroxysteroid dehydrogenase-like 4A.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025744 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006694 steroid biosynthetic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004303 estradiol 17-beta-dehydrogenase [NAD(P)+] activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0070524 11-beta-hydroxysteroid dehydrogenase (NADP+) activity Molecular Function

KEGG gene cross-reference

ath:AT5G50590

ath:AT5G50600

ath:AT5G50690

ath:AT5G50700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.654

Rank 1 · LXL04_025744 · OH-1004

Cytoplasm0.129

Rank 2 · LXL04_025744 · OH-1004

Nucleus0.098

Rank 3 · LXL04_025744 · OH-1004

Mitochondrion0.090

Rank 4 · LXL04_025744 · OH-1004

Golgi apparatus0.087

Rank 5 · LXL04_025744 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short61-249 aa

PF08659.17KR63-236 aa

PF13561.13adh_short_C267-248 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025744	`PF00106.32`	adh_short	61	249	4.8e-39	134.6
LXL04_025744	`PF08659.17`	KR	63	236	6.4e-06	26.9
LXL04_025744	`PF13561.13`	adh_short_C2	67	248	6.2e-27	95.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0DKC6`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase 1B	51.648%	Swiss-Prot	strong database homology
`P0DKC5`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase 1A	51.648%	Swiss-Prot	strong database homology
`Q9LUF2`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 4B	44.000%	Swiss-Prot	moderate database homology
`P0DKC7`	Arabidopsis thaliana	11-beta-hydroxysteroid dehydrogenase-like 4A	44.000%	Swiss-Prot	moderate database homology

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