LXL04_025740 | RubberDandelionOmics

Gene overview

LXL04_025740

Reference: OH-1004 Chr: Chr05 Coordinates: 116181513-116184096 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · LXL04_025740|LXL04_025740|OH1004|cDNA

ATGGATTGTTGGTCTCCTTCTGTGAATGTCGATCAAGAATTCGCCAAGCTTCTCAATCGTATGCATCCACCAAGGGTTACTGTCGATAACATCACAGACAGAAAAGCCACCTTGATTAAGGTAGACAGTGCCAACAAGCGAGGAAGCTTATTAGAAGTGGTTCAAGTTTTAACTGATTTGAATATACTAATCAAAAGAGCTTACATTTCTTCAGATGGCGAATGGTTCATGGATGTATTTCATGTTACTGATCAGTATGG...

CDS

Download CDS FASTA

1389 bp · LXL04_025740|LXL04_025740|OH1004|CDS

ATGGATTGTTGGTCTCCTTCTGTGAATGTCGATCAAGAATTCGCCAAGCTTCTCAATCGTATGCATCCACCAAGGGTTACTGTCGATAACATCACAGACAGAAAAGCCACCTTGATTAAGGTAGACAGTGCCAACAAGCGAGGAAGCTTATTAGAAGTGGTTCAAGTTTTAACTGATTTGAATATACTAATCAAAAGAGCTTACATTTCTTCAGATGGCGAATGGTTCATGGATGTATTTCATGTTACTGATCAGTATGG...

Protein

Download Protein FASTA

462 aa · LXL04_025740|LXL04_025740|OH1004|PROTEIN

MDCWSPSVNVDQEFAKLLNRMHPPRVTVDNITDRKATLIKVDSANKRGSLLEVVQVLTDLNILIKRAYISSDGEWFMDVFHVTDQYGNKLKEDNVADQIQQSLGPRGCSFRTLRGSVGFQSVMEHTTIELTGRDRPGLLSEIFAVLSDLKCNVVAAEIWTHNSRMASIVYITDNSTKLPVEDPDRLAKIKHLLVSILKGDKDKRGAQTAVSLGSTHTQRRLHQLMYADRDYDTDTDGSDSDLSNGCSNVKPLVTVENCSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025740`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025740

Location Chr05:116181513-116184096 (-)

Description Similar to ACR4: ACT domain-containing protein ACR4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69040`	May bind amino acids.	No verified direct reference in this release
`At2g03730`	May bind amino acids.	No verified direct reference in this release
`At1g76990`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484
`At3g01990`	May bind amino acids.	No verified direct reference in this release
`At1g12420`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025740 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006521 regulation of amino acid metabolic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016597 amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G12420

ath:AT1G69040

ath:AT1G76990

ath:AT2G03730

ath:AT3G01990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · LXL04_025740 · OH-1004

Nucleus0.391

Rank 2 · LXL04_025740 · OH-1004

Cell membrane0.171

Rank 3 · LXL04_025740 · OH-1004

Lysosome / Vacuole0.062

Rank 4 · LXL04_025740 · OH-1004

Endoplasmic reticulum0.046

Rank 5 · LXL04_025740 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24931.2ACT_ACR9_3rd26-102 aa

PF26956.1ACT_ACR_D134-106 aa

PF01842.32ACT38-85 aa

PF01842.32ACT126-173 aa

PF13291.13ACT_4126-168 aa

PF13740.13ACT_6128-169 aa

PF24931.2ACT_ACR9_3rd253-336 aa

PF01842.32ACT264-313 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025740	`PF24931.2`	ACT_ACR9_3rd	26	102	7.1e-21	74.8
LXL04_025740	`PF26956.1`	ACT_ACR_D1	34	106	3.5e-47	158.9
LXL04_025740	`PF01842.32`	ACT	38	85	7.8e-38	128.5
LXL04_025740	`PF01842.32`	ACT	126	173	7.8e-38	128.5
LXL04_025740	`PF13291.13`	ACT_4	126	168	5.6e-16	59.7
LXL04_025740	`PF13740.13`	ACT_6	128	169	7.5e-10	39.2
LXL04_025740	`PF24931.2`	ACT_ACR9_3rd	253	336	7.1e-21	74.8
LXL04_025740	`PF01842.32`	ACT	264	313	7.8e-38	128.5
LXL04_025740	`PF01842.32`	ACT	343	393	7.8e-38	128.5
LXL04_025740	`PF24914.2`	ACR10_N	344	396	1.3e-12	47.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LJW3`	Arabidopsis thaliana	ACT domain-containing protein ACR4	55.044%	Swiss-Prot	strong database homology
`Q9ZPQ8`	Arabidopsis thaliana	ACT domain-containing protein ACR5	54.762%	Swiss-Prot	strong database homology
`O49285`	Arabidopsis thaliana	ACT domain-containing protein ACR3	55.882%	Swiss-Prot	strong database homology
`Q9SGA0`	Arabidopsis thaliana	ACT domain-containing protein ACR6	54.091%	Swiss-Prot	strong database homology
`Q9LNA5`	Arabidopsis thaliana	ACT domain-containing protein ACR8	50.661%	Swiss-Prot	strong database homology

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