LXL04_025708 | RubberDandelionOmics

Gene overview

LXL04_025708

Reference: OH-1004 Chr: Chr05 Coordinates: 115635444-115639851 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2946 bp · LXL04_025708|LXL04_025708|OH1004|cDNA

ATGGAAGACCTCAAGCCGCTAAATACCATCGCTGATTCCTCTACAGAAACCGGAGCTACCTTTGAAGCTCGATTTAGCGACTTTTGCAAGGGTCGATTAACAATGGATGATAACGCTTTAGAAGAAGCGATGAAGCTCTTCAATAAAAGCAAACACCTTTTCTTGACAAATGCATCCAGTCTTGGAACTGGGACGCCTGAAGAAGCCGAGCACTACTGGTTTGCATTTCTCTTATTCTCCTTAAAAAGATTAAGCCAGAA...

CDS

Download CDS FASTA

2946 bp · LXL04_025708|LXL04_025708|OH1004|CDS

ATGGAAGACCTCAAGCCGCTAAATACCATCGCTGATTCCTCTACAGAAACCGGAGCTACCTTTGAAGCTCGATTTAGCGACTTTTGCAAGGGTCGATTAACAATGGATGATAACGCTTTAGAAGAAGCGATGAAGCTCTTCAATAAAAGCAAACACCTTTTCTTGACAAATGCATCCAGTCTTGGAACTGGGACGCCTGAAGAAGCCGAGCACTACTGGTTTGCATTTCTCTTATTCTCCTTAAAAAGATTAAGCCAGAA...

Protein

Download Protein FASTA

981 aa · LXL04_025708|LXL04_025708|OH1004|PROTEIN

MEDLKPLNTIADSSTETGATFEARFSDFCKGRLTMDDNALEEAMKLFNKSKHLFLTNASSLGTGTPEEAEHYWFAFLLFSLKRLSQKNDSEDATVTNENAFKLYQILRVAKLNFVDFFKELPQFIVKIGPILSNLYGSDWETRLQAKELQANFVHLSLLSKYYKRAFKALFLASLENVEGQSTVATSSDYMSNCHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFSLNDSSRFVKKEGKGVDLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025708`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_025708`
Location	Chr05:115635444-115639851 (+)
Description	Similar to RBR: Retinoblastoma-related protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025708` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0030154 cell differentiation Biological Process GO:0032875 regulation of DNA endoreduplication Biological Process GO:2000134 negative regulation of G1/S transition of mitotic cell cycle Biological Process GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0005667 transcription regulator complex Cellular Component GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding Molecular Function
KEGG gene cross-reference	rcu:8283405 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.928

Rank 1 · LXL04_025708 · OH-1004

Cytoplasm0.168

Rank 2 · LXL04_025708 · OH-1004

Mitochondrion0.024

Rank 3 · LXL04_025708 · OH-1004

Cell membrane0.022

Rank 4 · LXL04_025708 · OH-1004

Golgi apparatus0.010

Rank 5 · LXL04_025708 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11934.14DUF345295-233 aa

PF01858.23RB_A401-595 aa

PF01857.26RB_B703-828 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025708	`PF11934.14`	DUF3452	95	233	3.6e-34	118.1
LXL04_025708	`PF01858.23`	RB_A	401	595	4.1e-62	210.3
LXL04_025708	`PF01857.26`	RB_B	703	828	3.2e-40	138.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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