LXL04_025687 | RubberDandelionOmics

Gene overview

LXL04_025687

Reference: OH-1004 Chr: Chr05 Coordinates: 115238084-115257305 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4257 bp · LXL04_025687|LXL04_025687|OH1004|cDNA

ATGTCCGAGGCACCGCAACACAACATAGACAATGATAAGCAAGTTTGGAAGATATCGGCAGCCTTATCTTCAATTCTCAATGCCACACCAGGTTCTGAAGATTTCATAAGCTGCATAAAATCCAACTCCAACAATGTCAGCTTTGTCTCTCAATTCACTTTCACCCCTGCCAATGCTTCTTTCTCACCCATTTGGCAAGTTGCAGTGCAAAACACTAGATTCCTTAAACCTTCCACTCCTAGGCCATCAGTCATCGTCAC...

CDS

Download CDS FASTA

4257 bp · LXL04_025687|LXL04_025687|OH1004|CDS

ATGTCCGAGGCACCGCAACACAACATAGACAATGATAAGCAAGTTTGGAAGATATCGGCAGCCTTATCTTCAATTCTCAATGCCACACCAGGTTCTGAAGATTTCATAAGCTGCATAAAATCCAACTCCAACAATGTCAGCTTTGTCTCTCAATTCACTTTCACCCCTGCCAATGCTTCTTTCTCACCCATTTGGCAAGTTGCAGTGCAAAACACTAGATTCCTTAAACCTTCCACTCCTAGGCCATCAGTCATCGTCAC...

Protein

Download Protein FASTA

1418 aa · LXL04_025687|LXL04_025687|OH1004|PROTEIN

MSEAPQHNIDNDKQVWKISAALSSILNATPGSEDFISCIKSNSNNVSFVSQFTFTPANASFSPIWQVAVQNTRFLKPSTPRPSVIVTPVEDTLIQTTLFCAKKLGYELRIRSGGHDYEGLSYTADVPFVMLDFTNMRDIDVDVPNRFAWVQAGAVLGELYYAISQKTDTLYFPAGVCPTVGVGGYMGGAGYGNLLRKYGTAADNVVDVRFIDVNGNILNRKSMGEDLFWAIRGGGVSSFGIVLAWKLRLVPVPEKVTVFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025687`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025687

Location Chr05:115238084-115257305 (-)

Description Similar to At5g44440: Berberine bridge enzyme-like 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44440`	Involved in adaptation to salt stress.	No verified direct reference in this release
`At5g44400`	Berberine bridge enzyme-like 26.	No verified direct reference in this release
`At2g34790`	Required for endosperm development and polar nuclei fusion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025687 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:1901696 cannabinoid biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

GO:0050328 tetrahydroberberine oxidase activity Molecular Function

GO:0071949 FAD binding Molecular Function

GO:0102778 delta9-tetrahydrocannabinolate synthase activity Molecular Function

KEGG gene cross-reference

ag:ADY15026

ag:BAC41356

ath:AT5G44440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.392

Rank 1 · LXL04_025687 · OH-1004

Lysosome / Vacuole0.169

Rank 2 · LXL04_025687 · OH-1004

Cytoplasm0.163

Rank 3 · LXL04_025687 · OH-1004

Endoplasmic reticulum0.147

Rank 4 · LXL04_025687 · OH-1004

Cell membrane0.140

Rank 5 · LXL04_025687 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_482-218 aa

PF08031.18BBE477-519 aa

PF01565.29FAD_binding_4952-1088 aa

PF08031.18BBE1347-1402 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025687	`PF01565.29`	FAD_binding_4	82	218	4.4e-50	169.7
LXL04_025687	`PF08031.18`	BBE	477	519	6e-24	84.5
LXL04_025687	`PF01565.29`	FAD_binding_4	952	1088	4.4e-50	169.7
LXL04_025687	`PF08031.18`	BBE	1347	1402	6e-24	84.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FI21`	Arabidopsis thaliana	Berberine bridge enzyme-like 28	43.962%	Swiss-Prot	weak database homology
`Q9FKU8`	Arabidopsis thaliana	Berberine bridge enzyme-like 26	43.599%	Swiss-Prot	weak database homology
`O64743`	Arabidopsis thaliana	Monolignol oxidoreductase AtBBE-like 15	42.435%	Swiss-Prot	weak database homology

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